Cygnus atratus (black swan): 118253758
Help
Entry
118253758 CDS
T09349
Symbol
VPS13A
Name
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cata04131
]
118253758 (VPS13A)
Membrane trafficking [BR:
cata04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
118253758 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
118253758
NCBI-ProteinID:
XP_035414382
LinkDB
All DBs
Position
Z:40489041..40610260
Genome browser
AA seq
3194 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWQNLYTQPVEAVLDGVYLLIVPTASIKYDAEKEARQLLEARQRELQRIEE
AKQKIADQDKVKEEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDITNRNNPLSFGISLQ
NLSLQTSDKNWNPCLHDETAKLFYKLVRLDNLFAYWNVKSEMFYHGGYDESLVNLKQGVA
CHNVIPEGYDFVFRPISAKAKLLMNPRSDVDFSSPKMDLDVKLQDIAVEFNKPQYFSVME
LLESVDMMTRNLPYRKYRPDVPLHNNAKMWWKYVIYGILEVNVQPKLQMWSWEHIRHHRK
QVKNYKEMYKMKITSKKPNEEILKFLEEFEKTLDIFNITLARQQAEVEATKAGLKIYRPG
VKQDDENSGGWFSWIWGWSGEKKEEQKQEVKGSSLEELMTLEEKAKLYAAIGYSETAVDP
TLPKSYEAMKLSVRLLSMSISIRENKQTPELVKFTLDSLSTVFTQRPGAQAIRFETKVTS
LEVTGMSRENCIPCLLSSRTVYSDNSTSLLSITFETNPLDEKADQRLRIESQPLEIIYDA
RTINSLIDFFRPPKNVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLDLKINLMASY
IIVPQKGFYDCTSNLLLLDLGSLKMKSKSRSDLSELKVGQSTIEDIMSRAYDSFDVQLTS
IQLLYSKHDENWQEARKLKYSSQHILQPLDVKVEFSRAMVVTDARMPKFKLSGQLPLLSV
QISDQKLTSILELIDSIPKPESAPATTSPPKITEAVISPVLSVPHLSQGVLPVLDLHSFV
ESESEEEFYDALSSPVEDMPFFEAPSGSLTRASSIKRKKLRKQESLKNMTEFQLRFEVAE
VLIKLCRLTDNIETPVLQLEVVGLGTELKLRTFDMTANAFLHEVCLLCPEYMDDNGKPVY
IITTLDNVEDDLLTLEYIKADINGPELKTAYQNVLQKIKVNFSSLDVHLHTETLLNAMNY
LNNLLPKQETKVAEEPVHEKIEEKKDVLKKLTSKKSKYEDVIDLNICADLSCLRVFIREK
KHRIAEIHIEGLDSQVIMKKTATEVTAKLKNIIIMDSDEMALYKKALYITGKEVFNFKMI
SYVNATDGIAYTDMDVVDNSISLTVGCIQVVFVNKFVSSILAFINNFQAAKEALTEATVQ
AAEKAATGVKELAERSSRLALDINIKAPVVIVPQSAVSANVLVADLGLITVKNHFFIAKS
RAWYNLPPVVDSMTVNLSELKLYRSYYEQDSLQSEVQLLQPLNLEVVVERNLAAAWYNEV
PDIEISGRLKPMNLILSQEDITTILRTLNENICGSSDASPPLPEPKDTTSHCSDIHSTSQ
QSAGVTVVTSAVVELHSPVKIKTTLKVDFRFDSLTLVLYSPNSKQVTNLDQRDDLLKLAE
FKLVLMSAAVKMLSDGSTNASVKLANCTLDDKRQSIQKATPRMVEMKHGFEKKVMVDISY
KQGRDGTVFDMIVQEIYLCASMEFLLTVADIFLKANAESAAAQRNLKQSLPLKEQAPVQP
VSTMEMNIIVKNPEIVFVADLTRSDAPALVVTTQCEVFIKNSPERYSMTAAVKEIQMKAC
PFLPEKRKGNVTTVLQPCDFFFEMKQSGTNPQSADLMIKSLTVKVSPIIINTVITITSAL
YRTAEATEEEISQIPPDLWNMKDVKNLKMWFLEESNENEDTNPTSELVPTGESLKMSVES
VVLTVEAGVGHRTVPMLLAKSSFLGEVKNWSTLINLHSQLELEVHYFNEMFGVWEPLLEP
LEIEKTDLFKPWILEIKMKKKPKKALVESDAEENYKVPEHKTVINVSSKDQLNITLSKCG
LQMLSNLGTAFAEAASQTSDIFKKDRAPFVLINSLGLPITVSPSDSFSVLNVEFGAKIFH
LIDGENLNMEYVRTKNESDQFTAMTTLSSKRFYVQICPHNHSTVEKIPLTKVGRCIYRVR
HEESGVERSIVCQIDTVEGSKIITIRSPIQIRNHFSIPFNIFEEGRCLGTASPENEFNIP
LSSYRSVLSLQPVANESGVDGEYDLCEGITFDEIMKNVDSLLQRKCQSVRSTNHSFVINI
VIAKDTLTSTLCADDQWDFPYVVHLWPSVLLRNLLPYHITYSVEGNVNKYNTLEDGCSAQ
IHNAVLDQTKLVLQLLNYLDQNWKSEYHIKSNLPEISFTTFYCITELDKTELDIAVHVTY
TTGQMVMAIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFLQNNKVQLM
VTDSELSDQFSLDTVGSHGSVKCKSHKKEYQVGVTINNSSFNITRIVTFTPFFMISNRSK
YTLEVAEEGKEKWIPIVLQQCIPFWPENDANKLLVRVENSDLPPKKINFDKQENCLLLHL
DNKLGGIIVDVNLTEHSTVITFSNYHDGAAPFLLINHTEEEIIEYGQSSLSQLEGCLQPN
KAVLYTWADPAGSRKLTWKCGKMTEEITPKEDKMKVLSLDCRKVVYLASFFEGLQRIVLI
TEDENVFKLAYESIKAELAEQEIILSLQDVGISLVNNYTKQEVSYIGITSSDVVWETKPE
KKSRWRPMSVKQTDKLEQEFKDYSELTPSENKIIELESNVLVCLTPNGCNMKIQQPNEIP
IRRNYLPALKVEYSSSAHQKSFRIQVYRIQIQNQIPGAIFPFVFYPIKPPKSITLDSAPK
PFTDVSIVMRTAGHSQISHIKYFKVLIQEMDLRLDLGFLYALVEFFTQTDVPNGQQLELF
KKDVESLQEELMSVSSMDTSQISLYEYFHISSIKLHLSFSLSTGGEDSNKEERKNELIPL
QSLNLLLKSIGATLTDVQDVVFKLAFFELNYHFCTTQQLQSAVLRHYSKQAIKQMYVLIL
GLDVLGNPFGFIRDLSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAA
SRITGAMAKGVAAITMDEDYQQKRREAMNKQPTGLREGITRGGKGLVSGFVSGITGIVTK
PIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKKVADSSEDVVSLRPPR
FFGEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYIAHAMVNSTDLLMVTKSGVLFVTKG
TFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKIINFKSPEDAKWI
LSKLEEVRENQPKS
NT seq
9585 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcgctggtcgtggacgtcctgaaccgcttcctcggcgactacgtggtg
aacctggacagctcccagctgaagctgggcatctggggaggagctgtagcactgaagaat
cttgaaataaaagaaaatgcactgagtcagctggatgtgccatttaaagttaaagcagga
catattggtcaacttaacttacagattccatggcaaaacctttatactcaacctgttgag
gcagttcttgatggagtttatttgcttattgtgcccacagccagcataaaatacgatgct
gaaaaagaagccaggcagctcttggaagcaaggcaaagagaattgcaaaggatagaggaa
gcaaagcagaaaatagctgaccaagataaagtaaaagaagagaaacaagacacttttgta
gaaaaactagtcactcaggtcatcaaaaatcttcaggtgaaaatttccaacatccatgtt
cgctatgaagatgatatcacaaatcggaataatcccttgtcatttgggatttcacttcag
aatctaagcttgcagacctcagataagaattggaatccgtgtttacatgatgaaactgcc
aagttgttctacaagcttgtacgactggataacctttttgcttactggaatgtgaaatcg
gagatgttctatcatggtggttatgatgaatcattggttaacttgaaacagggagttgcc
tgccacaatgtgattccagagggttatgattttgtattccgtccaatttcagctaaagcc
aaactccttatgaatcctcgatctgatgttgatttctcatctccgaaaatggatttagat
gtaaagttacaggacatagctgttgaattcaataaaccacagtatttcagtgttatggag
cttcttgagtctgttgatatgatgactcgaaatctgccgtataggaagtacagacctgat
gttccattgcacaacaatgccaagatgtggtggaaatatgttatttatggcatccttgaa
gtaaatgttcaacctaaactccaaatgtggtcatgggaacatattcggcaccacagaaaa
caagtgaagaattataaggagatgtataaaatgaagataacatcaaaaaagccaaatgaa
gaaatcttaaaatttttggaggaatttgaaaagaccttggatatttttaacatcactcta
gcaaggcaacaagcagaagttgaggcaactaaagctggattaaaaatatacagaccagga
gtaaaacaagatgatgaaaattctggtggctggtttagttggatatggggctggtcaggt
gaaaaaaaggaggaacagaaacaagaagtaaagggttcaagtcttgaagagctgatgaca
cttgaagagaaagctaaactttatgcagcaattggatatagtgaaacagctgtggatcca
acgcttccaaaatcatatgaagccatgaagttgtctgtgagactattaagcatgtctata
tcaataagagaaaacaagcaaacccctgagctggtaaaatttacgttagatagcttgagt
acagtattcacacaacggccaggtgcacaagcaataagatttgaaacgaaagtaacctca
cttgaagttacgggcatgtcccgagaaaactgtataccctgtctgctatcttctcgaaca
gtctattcagacaatagtacctcactcttaagcataacatttgagactaatcctttggat
gagaaggcagatcagaggcttagaattgaatcacagccactggaaataatatatgatgca
agaacaataaatagcttaatagatttcttcaggcctccaaaaaacgtacatttagagcaa
ttgacatctgcaactttgatgaagcttgaagaatttcgtgagaaaacatcaacaggtttg
ttgtatgttatcgaaacccagaaagttcttgacctcaaaattaacctcatggcttcatac
ataattgttccacaaaagggattctatgactgtacatcaaatctactgcttttggatctt
ggtagtcttaagatgaaaagcaaaagtcgttctgatttatcggaacttaaagtaggacaa
agcactattgaagatataatgtcaagagcttatgacagttttgatgtccagctcaccagt
atacagttactctacagcaaacatgatgaaaactggcaagaggctcgtaagctgaaatac
tcatctcaacatatcttgcagcccttggatgtgaaagtggaatttagcagagctatggtt
gtcacagatgcaagaatgcccaagttcaaactgtctggacaactgcctttactttcggtc
caaatatcagaccaaaagctgacaagtatcttggagctaattgatagcattcctaaacca
gaaagtgctcctgctaccacttctcctccaaaaataactgaggctgtgatatcccctgta
ctctcagtgccacatttatcacaaggcgtgcttcctgttttggatcttcattcgtttgtg
gaatcagaatcagaagaagaattttatgatgctctaagcagtcctgtggaagacatgcca
ttttttgaagccccatctggttccctcacacgagctagcagtataaagcgaaaaaaacta
cgtaaacaagaatctttgaaaaatatgactgaatttcagctgaggtttgaagtagctgag
gtcttaataaaattatgccgccttactgataatatcgagacacctgtgctgcagcttgag
gtcgtagggttaggcactgaacttaaattaagaacgtttgacatgactgcaaatgctttc
ctgcatgaagtttgtctgctgtgcccagagtatatggacgataatggaaaaccagtttac
ataattactactttggataatgtagaagatgatcttctcactttggagtatataaaggct
gatattaatggaccagaactgaagactgcgtatcagaatgttctacagaagataaaggtg
aacttctcttctcttgatgttcatctgcatactgaaactctcctgaatgccatgaactat
ctaaacaatcttctacccaaacaagaaactaaagttgcagaagaaccagttcatgaaaaa
attgaggagaagaaggatgttcttaagaaattaacatcaaagaaatcaaagtatgaagat
gttatcgacctcaatatctgtgcggatttatcctgtttacgtgtctttattagagagaaa
aaacatagaatagctgaaattcacattgaaggtctggatagccaagtgatcatgaaaaaa
acagcaacagaagtgactgcaaaattaaagaacatcattatcatggattctgatgagatg
gcattgtataaaaaggctctttacatcacaggaaaagaagtcttcaacttcaaaatgata
tcttatgtgaatgctacagatggaattgcgtatacagatatggatgttgttgacaatagt
attagcctaacagttgggtgtattcaagtagtttttgtcaacaagtttgtttcttctatt
ttggcttttataaataactttcaagctgccaaagaagctcttactgaggcaaccgttcaa
gcagcagagaaagcagctacaggtgtaaaagagctagcagagcgtagttctcgtttggca
ctagatatcaatatcaaagcacctgttgtgatagttccacaatcagcagtgtctgcgaat
gtcctggtggctgatcttggtctaattactgtaaagaaccatttttttattgctaaatca
agagcttggtacaatctcccacctgttgttgactctatgacagtgaatttgagcgaactg
aagttatacagatcatactatgagcaggactcattgcaaagtgaagtacagctgctgcaa
ccactcaatctggaagtagttgttgaacgaaatttagctgctgcatggtataatgaagtt
cctgatattgaaatatctggacgactcaagcctatgaatctaattctcagtcaggaagac
attacaacaatattgaggacattaaatgaaaatatatgtggaagctcagatgcatcacca
cctttaccagaaccaaaagatacgactagccattgtagtgatatccacagtacctcacag
caatctgcaggtgtaacagtcgtgacatcagctgtagtagaattgcattcacctgtaaaa
ataaaaacaacactaaaagtggatttcagattcgactccctgactttggtgctgtatagt
ccaaactcaaaacaggttacaaatttggatcagagagatgacctgttgaagcttgcagag
tttaagttagttttaatgtcagctgcagtcaaaatgttatcagatggttcaacgaatgct
tcagtcaagctagcaaactgtacattagatgataaaagacagtcaatccagaaggctaca
ccaaggatggtggaaatgaagcatggatttgaaaagaaagttatggtggatataagctat
aagcaggggagagatggcactgtttttgacatgattgttcaagagatatacctttgtgca
agcatggaatttctacttactgttgcagatatattcctaaaggctaatgcagaaagtgct
gctgcacagagaaatctcaagcagtcattacctttaaaagagcaagcacctgtgcagcct
gtatctacaatggaaatgaacataattgttaaaaatccagagattgtgtttgtggctgat
ttaacaagaagcgatgctcctgcattggtggttacaacacagtgtgaagtcttcattaaa
aatagccctgaaaggtatagcatgacagctgctgttaaagagatacaaatgaaagcatgc
ccatttcttccagaaaaaaggaaagggaacgttactacggtactacagccttgtgacttc
ttctttgagatgaaacaatcgggtactaatccacagtcagctgatctaatgattaaatct
ctgacagtaaaagtttcaccaataatcataaatacagtaatcactattacctccgccctt
tatcgaactgcagaagcaacagaagaagagattagtcaaattcctccagacttgtggaat
atgaaagatgtaaaaaatctgaaaatgtggtttcttgaagagtcaaatgaaaatgaagac
acaaatccaacctctgaactggttcccacaggagagtcattgaaaatgagtgtagaatct
gttgttctaacagttgaagctggggttggccaccgaactgtaccaatgctgttagccaaa
tcctcatttcttggagaagtcaaaaactggagtacacttatcaacctacattctcagctt
gagctagaggtacattattttaatgagatgttcggggtgtgggaaccattacttgagcca
ctagaaattgagaagactgatttattcaaaccctggattctagaaatcaagatgaagaag
aagcctaaaaaagcattagttgaatcggatgcagaagaaaactacaaagttccagaacac
aaaacagtaataaacgtttcctcaaaagaccagctgaatattacactatccaaatgtggt
ctacaaatgttgagtaacttgggcacggcatttgctgaagcagcaagtcaaacttcagac
atcttcaaaaaagaccgagcaccatttgtactaataaattctttaggacttcccatcact
gtctcacccagtgattcctttagcgtcctcaatgtcgaatttggagcaaaaatatttcat
ttaatagatggagagaatttaaatatggaatatgtcagaactaaaaatgagagtgaccag
ttcactgcaatgaccactctgagtagcaaaaggttttacgttcaaatctgtccacataat
cattccactgtggagaagattccattaacaaaagtgggtcgatgtatttacagagtaagg
catgaggaatcaggtgttgaaaggtccattgtctgccaaattgatactgttgaaggaagc
aagataataactatacgttctcctatccagataaggaatcatttttcaatcccgttcaat
atttttgaggagggaagatgtttagggactgcatcaccagaaaatgaattcaacatacca
ttgtcctcatacagatccgtactgagtttgcaacccgtagccaatgaaagtggagtggat
ggagaatatgatttgtgtgaaggaattacatttgatgaaattatgaaaaatgttgacagc
ttattacaaaggaaatgccagtctgtgaggtcaactaaccactcctttgtcatcaatatt
gttatagcaaaagacacgttgacatctactttatgtgcagatgatcaatgggattttccg
tatgtcgttcatttatggccttctgttcttctccgcaatcttcttccatatcacattact
tactctgtagagggaaatgtgaacaaatataacactctggaagatggatgttcagcccag
attcataatgcagtcttggatcaaacaaaactagttttacagttgctgaactatctagat
caaaactggaaaagtgagtaccatataaaaagtaatctaccagaaatcagcttcacaacg
ttctactgcatcacggagctggataagactgaactggatattgctgtccacgtgacctat
acaactgggcagatggttatggcaattcacagtccatactggatggtaaataaaactggt
cgaatgttgcagtacaaagctgatggtatccaccgcaagcatcctccggattacaaaaag
ccgctacttttttctttccagcccaaaaactttctccaaaataacaaggtgcagcttatg
gtaactgatagtgaattgtcagatcagttttcactggacactgttggaagtcatggttct
gtgaaatgcaagagtcataaaaaggagtatcaagttggtgtcaccataaacaacagcagc
tttaatattactagaattgtgactttcactccattttttatgatctcaaatagaagcaaa
tacactttggaagtagctgaagaaggcaaagaaaagtggatacccattgttttgcaacag
tgtattcccttttggcctgaaaatgatgccaacaaactgcttgttagagttgaaaattca
gatctgcctccaaagaagataaattttgataagcaagaaaattgtctcttactgcatttg
gacaacaagcttggaggaattatagtggatgttaacctgactgaacattctacagtgatc
accttttctaattaccatgatggcgcagcaccatttctgttgataaaccatactgaggaa
gaaattattgagtatggacaaagctccctcagtcaattggaaggctgtcttcagccaaat
aaggcagtgttgtacacttgggcagacccagcaggatctagaaaattgacatggaaatgt
ggaaaaatgactgaggaaatcaccccaaaggaagacaaaatgaaagtactcagcctggac
tgtagaaaagtggtctatttagcatcattttttgaaggtttgcagcgtattgtcctaatc
actgaagatgagaatgtttttaaactggcatacgaaagtataaaggcagaactagcagaa
caagaaatcattctgtctttacaagatgtcggaatttcattggttaataattatacaaag
caggaggtgtcctacattggaattacaagttctgatgtggtttgggagacaaaacctgag
aagaaatcaagatggagaccaatgagtgttaagcaaactgacaaattagaacaagaattc
aaagattacagtgagctaactccttcagaaaataagattattgagttggaatccaatgtc
ttggtgtgtttaactcctaatggatgtaacatgaaaattcaacaacccaatgagattcct
attagaaggaattacctgccagctttgaaagtagagtacagttcatcagcacaccagaag
tctttcagaattcaagtttacaggatacagatacaaaaccagattcctggagccatattt
ccctttgtgttctatcctattaaacctccaaagtccatcaccttggattcagcaccaaaa
ccatttaccgatgtcagtattgttatgagaactgcaggacattcacaaatatctcatatt
aagtacttcaaggtcctgattcaagagatggatctcagattagatcttggtttcctctat
gcactggttgaattctttacacagactgatgtaccaaatggccaacagctagaacttttc
aaaaaggatgtggagtctcttcaagaagaactgatgagtgtgtcatcaatggatacatca
caaatcagcttgtacgagtacttccatatctcttcaattaagttacacttaagcttttca
ctcagtacgggtggtgaagatagtaacaaagaagaaagaaagaatgaattgataccactt
caatccttgaatctccttctgaagagtataggtgcgaccctcacagatgtacaagatgtt
gtctttaagttggcattctttgaactcaattatcacttctgtactacacagcagctccaa
tcagcagtgttaaggcattattcaaaacaggctattaagcagatgtatgtgcttattctt
ggccttgatgtcttgggtaatccatttggatttataagagacttgtctgaaggagtagaa
gcattcttctatgaaccttatcagggagccatccagggtcctgaagaatttgtagaagga
atggcactaggacttaaagctctagtagggggagctgttggtggattagctggtgctgct
tcaaggatcactggtgctatggcaaaaggagtagctgcaataactatggatgaggattat
cagcagaaaaggagagaagccatgaataaacagcccactggtctgagagagggtatcact
cgtggaggaaaaggattagtttctggtttcgtcagtggcataacaggaatagttacaaaa
ccaataagaggagctcagaaagaaggagcagctggttttttcaaaggtgttggaaaaggc
ttagtgggagcagtagctagacctactggaggaatcatagacatggcaagcagcacattt
caaggtatcaaaaaagttgcagattcatcagaagatgtggtgagcctgcgcccacctcgc
ttctttggtgaagatggagttattagaccttacagattaagagatggaaccggaagtcaa
atgttacagaaaattgaaaatggaagatttgcaaaactcagatatattgcacatgctatg
gtcaacagtacagatctgttaatggtgacaaagagtggcgtcttatttgtaacaaaaggg
acatttggacagttgacatgtgaatggcaatacacttatgatgaatttactaaagaacca
ttcattgttgatggcagaagattacgcattgaagcaaaggaacgagtaaagtctgtgttc
catgccaaagaatttggaaaaattattaattttaaaagtccagaggatgctaagtggatc
ctttctaaactggaagaagtgagagagaatcagccaaaatcataa
DBGET
integrated database retrieval system
