Cygnus atratus (black swan): 118253908
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Entry
118253908 CDS
T09349
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118253908 (HELZ)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
118253908 (HELZ)
3'-5' decay
Other 3'-5' decay factors
118253908 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
AAA_22
zf-CCCH_4
AAA_16
AAA_7
Bac_DnaA
AAA_5
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
118253908
NCBI-ProteinID:
XP_035414678
LinkDB
All DBs
Position
18:9498457..9582130
Genome browser
AA seq
1942 aa
AA seq
DB search
MADRRPEKSCEQACESLKQQDYEVAVKHCTEALLSLSQYPPAHLPEACQAEIDRIKIETL
LYRIASFLQLKKYGQADEDCRHVLGEGLAKGDGSFRAVLCCMHLKGKLQIVSNVLSKSLM
GESLNGMVTKDLTRLKTLLAETEAAGKVPSGYHVEDLEEGSRDGWQFRPPPRGVTSSEEY
TLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGSYMETLIE
KWMNSLSPEKVLSESIEGVRVEHNPELSVTVTTKKSHQTWTFALTCKPARMLYRVALLYD
AHRPHFSIVAISAGDSTTQVSQEVPENCQEWIGGKMVQNGIDHYIYKVSIAFNTEIFGTF
RQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIVEFEPNET
TELEKSLLTRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNIK
VQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVTK
EKSAQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPLC
EMHYALDRIKDNSILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQL
PPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGNP
QARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLCQ
LDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERNL
HVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPL
TFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQV
FRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDST
EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHGI
TFEQIKAQLEALELKKTYVLNPLAPEFIPRALRHQHSANTTKQQQSPPKGKVHLHNQNDH
FPPDGIVQPNPSVLIGNPIRAYTPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNMVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQAHGRGSPIPYGLGHHSPV
SIGQQQQLQHPDKEQHEQSRNGKSETTAGPEISKIRTPEKKPVELKQVDLDTNSQNRSPE
SRSNVAYPNAKFHRKDNLNPRQLNLHLTPPHSQYAVPNRHFQHLSQIPRQPYPLQQQQNL
LSQQQNHLPEQQNQMPPQQSQVVQQHNHLNQQPPQPSQLSPAYQAGPSQSFFNNPIPHRP
HSPAVDAVISEQHPPPMLQEVSNPLRPIAQHNPVLPTHLNNFIEENPSGMPLGDTLDRMH
GNVALETIRQQQQARLQQWNEHNAYLSQGTIPYQHHHHPHLPHLPQQPIGLHQQQQVRAN
WKLASNTEDETEATYSRFQDLLRELSHRDQSESRDLAEMPPPQSRLLQYRQIQPRSPPAL
PSPSCNSNHSGHFPNFTENNRDIEIPSNPAFQQHLPQIYNPPFSMPSEHITPSPLKYLQP
DGSWTYANLQQNHLMGQGFHYGIPPLPHRAQQNPFIQIQNHQHAVGQEPFHPLTSRAVSA
SSLHSLEEYEPRGPGRPLYQRRISSSSVQACSEELSTPQESLGQCKELQDHSNQSSFNYS
SPELWVNSSSSAPYPNIPCNGANRAVPPRELLAPPKTVKPPEEHLKAENIQLSNSFNYNV
LQHLGQFPPLMPNKQIVESNSNSQQNAGGSKPVMSYASALRAPPKPKPPPEQTKKNSDPL
SLFQELSLGSSSGSNGFYSYFK
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaagtcatgtgaacaagcatgtgaatcccttaagcagcag
gattatgaagtggcagtgaagcattgcacagaggcactcctttccctcagccagtacccc
ccagctcacctcccggaggcatgccaggcagaaatcgaccgcatcaaaatcgagactctt
ctgtatagaattgcttcctttttacaacttaaaaagtatgggcaagcagatgaagactgt
aggcatgtgctgggagaggggctggccaagggagatggatctttccgtgcagtgctctgc
tgcatgcatcttaaagggaagctgcaaattgtgtctaatgttctttccaaatcactgatg
ggtgaatcactgaacgggatggtaactaaagatctgacacgactgaaaacacttcttgca
gaaacagaggcagctggtaaagtaccatcaggatatcatgtagaagatttagaagaaggg
tcccgggatggctggcagttccgccctccacccagaggagtcacaagcagtgaagaatat
acactatgtaaaagatttttagagcaagggatctgcaggtacggtgcacagtgtacttca
gcacattcccaggaagagctaacagaatggcaaaaacgatatgcttcccgcttgatcaga
ttaaaacagcagaaggaaaacaaacagtgttcgggcagttatatggaaaccttgattgag
aaatggatgaattcgttatctcctgagaaagtgcttagtgaaagtatagaaggagtgaga
gtagaacataatcctgagctatcagtaactgttaccaccaaaaagtctcatcagacgtgg
acatttgctctcacttgtaagcctgcaagaatgctgtatcgagtggcattgctttatgat
gcccatcgtccacatttcagtatcgttgcaatatctgctggagacagcactacccaggta
tcacaagaagttccagaaaactgtcaggaatggataggaggaaagatggtccagaatgga
atagatcattatatatacaaagtcagtatagcctttaacacagaaatctttggaactttt
cgccaaactgttgtgtttgattttggattagaaccagtcctcatgcaacgagtaatgatt
gatgctgcttcaactgaagatcttgaatacttgatgcatgcacggcaacagctactaacc
acagctaagcgttgggattctacttctaagactattgtagaatttgagcctaatgaaact
actgaattggagaagagccttcttaccagataccaaatccctctctctgctgaccagcta
tttacacaatctgtcctggacaaatcattgaccaagaccaactatcagtcacggttgcat
gacctcctttatattgaggaaatagcacagtataaggaagttagcaagttcaacataaaa
gtgcaattgcagattgtagcaagcttcatgctcactggggtttctggaggtgcaaaatat
gcccaaaatggacaactttttggacgctttaagctcactgaaacgctttcagaagacact
ttggctggacggctggtgatgaccaaagtcaatgctgtttatttattgcctgtcactaaa
gagaaatcagcacagacccaaggaaccaaagagaaggtttatgaagcagctattgaagag
aaaacaaaagattatatcttcttgagggtatccagggaatgctgtgaagaacttaatctt
cgggcagattgtgaaatgcaggttgaacttcagtttcagttaaatcgcttacccctctgt
gaaatgcattatgccttggacaggattaaggacaacagtattttgtttccagatgtcagc
atgactcccaccataccctggagtcccaacagacaatgggatgagcagttggaccctcga
ctaaatgctaagcagaaagaggctgttctggctatcactactccactttcaatacaactg
cctcctgttcttatcatcggtccctatgggacaggaaaaacgttcactctggctcaggca
gtcaagcacatactccagcaacaggatactagcaggattctcatttgcacccattctaat
agtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaatccc
caggcaagacctctcagggtatatttcagaaatcgctgggtaaagactgtccacccagtt
gtgcatcagtactgtttgatttcaagcacacattccacctttcagatgccacagaaagaa
gatattcttaagcaacgagtagtagttgttacgttaaatacatcacagtatctgtgtcaa
ctggatcttgaaccaggtttttttacacacattctgttagatgaagctgcacaggctatg
gagtgtgaaactattatgcctctagcattagctaataaaaacacaagaatcgtcttggct
ggagaccatatgcagctcagtccttttgtctacagtgaatttgccagggaaagaaacctg
catgtttcattgcttgatcggctctatgagcactaccctgcagaatttccatgcaggatc
ttgctgtgtgagaactatcgctcccatgaagctatcatcaattacacatctgaacttttc
tatgaaggcaaattgatggcaagtggaaagcagccagcacacaaagatttctacccttta
actttcttcacagcacgtggagaagatgtgcaggaaaaaaatagtacagctttttacaat
aatgcagaggtgtttgaagtagtagagcgtgttgaggaattaagaagaaaatggcctgtt
gcctggggcaagttggatgatggcagtataggtgtcgtaacaccttatgctgatcaagtg
ttcagaattcgtgctgaacttcggaaaaaaaggctgtctgatgtcagcgtagagagagtg
ctaaatgttcagggaaaacagtttagagtgttgtttctcagcacagtacgaacgcggcat
acgtgcaaacataagcaaacaccaattaaaaggaaagagcagttactggaggattcaaca
gaagacttggattatggttttctgtctaattacaaacttctcaacactgccattacaaga
gcacaatccttggtagctgtggtgggagatcctattgctttatgttccatcgggagatgc
aggaaattttgggaaaggtttattgccctatgtcatgagaatgaaagtctccacggtatc
acatttgaacagatcaaagctcagttggaagctttggagttaaagaaaacctatgtgttg
aacccactggctcctgagtttattccccgagctcttcgacaccaacattcagcgaatacc
accaagcagcagcagtcgccaccaaagggcaaggtccatcttcataaccagaacgaccat
ttcccacctgatggaattgttcagcccaatccttctgtcctaataggaaatcctatccga
gcgtatactcctccccctcctcctctgggacctcaccccaacctggggaaatctccaagt
cctgttcaaaggatagatccacacactgggacaagtattctatatgtacctgctgtctat
ggaggaaacatggtcatgtctgtgcctttgcctgtaccatggacggggtatcagggtagg
tttgcagttgaccctcgaatcattactcatcaagcagctatggcatataatatgaacctg
ttacaggcacatgggcgtgggtctcctataccttatggcctgggacatcattcaccagtt
agcataggacaacagcagcagcttcagcatccagacaaggagcaacatgaacaaagtcga
aatggtaaaagtgaaaccactgctggacccgaaatcagtaaaattcgaacacctgagaag
aaacctgtagaattgaagcaggttgacttagacacaaattctcagaatagaagcccggag
tcacgttccaatgttgcttaccctaatgctaaatttcatcgcaaagataatcttaacccc
aggcagctgaatctacatctcaccccaccccactcacagtatgcagttcccaatcgccac
ttccagcacctgtcacagataccaaggcagccatatcctctgcaacagcagcagaacctt
ttaagtcaacaacaaaatcatttgcctgaacaacaaaaccaaatgccaccccagcaaagc
caggtagttcagcagcataatcatttgaatcaacagcctccacaaccttcgcagctttcc
cctgcttaccaggcaggccccagccaatctttttttaataacccaattccccaccgacca
cattctcctgctgtagatgctgtgatttcagaacaacaccccccacctatgttacaagaa
gtcagtaatcctttgaggcctattgcacagcacaaccctgttctgccaacccacttgaac
aacttcattgaagagaatccatcaggaatgcccttaggggacactttagatcgtatgcat
ggaaatgtagctttggaaacaataaggcagcagcaacaagccaggttacagcaatggaat
gaacataatgcctatctcagtcaaggcactattccatatcaacaccatcaccatcctcat
ctaccacatcttcctcagcaaccaattggattgcatcaacagcagcaagttagggcaaac
tggaaacttgccagtaatacagaagatgaaacagaggcaacatattcaagattccaggat
ttgctcagagaactgtcacaccgtgatcaaagtgaaagtcgggacttagctgaaatgcca
ccccctcagtcaagactgttgcaatacagacaaattcaacccagaagcccaccagcactc
ccttctccttcctgcaactctaatcacagtggtcactttcctaacttcactgaaaacaac
agagacattgaaatacccagtaacccagcatttcagcaacatttaccccaaatatacaat
ccccctttctcaatgccatctgaacatataaccccatctcccttgaaatacctgcaacct
gatggatcgtggacttatgctaacctacagcagaatcacctaatggggcagggctttcat
tatggtatacctccattgccccatagggcccagcaaaacccttttatacaaatacagaat
catcagcatgcagttggtcaggagccatttcatccactcacatctcgagcagtatctgct
tcttcgctccacagcttagaagagtatgaaccaagaggaccaggcaggccgttgtaccaa
agaagaatttcctctagttcagtccaggcttgttctgaagaattaagcactcctcaagag
agtcttggtcagtgtaaagagcttcaggaccacagtaaccagtcatctttcaactattca
tcacctgagttgtgggtaaactcttcctcatctgccccgtacccaaacattccatgcaat
ggagccaacagagcagttccaccccgggagttgttagctccaccgaagacggtcaagccc
ccagaggaacatctgaaggctgaaaacatacagctctcaaattccttcaactacaacgtg
ctgcaacatcttggccagttcccacctctcatgcccaacaagcagatcgtcgaatccaac
agtaacagccagcagaacgctggtgggagcaagcctgtcatgtcctacgcaagtgctctg
cgggctccgccaaagcccaaacctcctcctgagcagacaaaaaagaatagcgaccctttg
tctttgtttcaggaacttagcctaggtagttcatcaggtagcaatggcttttactcctat
tttaaataa
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