Cygnus atratus (black swan): 118254009
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Entry
118254009 CDS
T09349
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118254009 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cata03041
]
118254009 (DDX5)
03009 Ribosome biogenesis [BR:
cata03009
]
118254009 (DDX5)
Enzymes [BR:
cata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118254009 (DDX5)
Spliceosome [BR:
cata03041
]
Complex A
U1 snRNP components
U1 related factors
118254009 (DDX5)
Complex B
118254009 (DDX5)
Ribosome biogenesis [BR:
cata03009
]
Eukaryotic type
Pre-60S particles
Helicases
118254009 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
P68HR
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
118254009
NCBI-ProteinID:
XP_035414854
EnsemblRapid:
ENSACYG00000005560
LinkDB
All DBs
Position
18:complement(9187977..9195147)
Genome browser
AA seq
603 aa
AA seq
DB search
MPGYSSDRDRGFGAPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPD
VVRRTVQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSGRSR
GDRRDRYSAGKRGGFSSFRERENFERTYGALGKRDFGAKAQNGAYTAQSFSNGTPFGNGF
AAAGMQAGFRAGNPAGAYQNGYDQQYGSNIANMHNGMNQQQYAYPATGAAPMIGYPMPAS
YSQ
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccagcgacagggacagagggtttggagcacctcggtttggaggaagt
agaggtggacctctttctgggaagaaatttggaaaccctggggaaaaacttaccaaaaag
aaatggaatttagatgaactgcccaaatttgaaaagaacttctatcaggaacatcctgat
gtagttagacgtactgtgcaagaggttgagcagtacaggtcaagcaaagaagtcacagtt
aggggccataactgtccaaaaccaataataaacttctatgaagccaactttcctgcaaat
gttatggaagtgattcagaggcagaacttcactgaaccaactgctatccaagcacaagga
tggcctgttgccttgagtggattggatatggttggagttgcacagactggatcagggaaa
acgctgtcttacttgttgcctgctattgtgcacataaatcatcagccattcctagagcga
ggagatggacctatttgtcttgtgctggcaccaactcgtgaactggctcaacaagtgcag
caagtagccgctgaatacagcagagcatgccgcttgaagtctacatgtatttatggaggt
gctccaaagggaccacaaattcgtgacttagaaagaggtgtggaaatttgcattgcaaca
cctggaagacttatagacttcttagaagccggaaagaccaatctcaggaggtgtacttac
cttgttcttgatgaagctgaccggatgcttgacatgggatttgaacctcagatcagaaaa
attgttgatcagataagacctgacaggcaaactctgatgtggagtgccacatggccaaag
gaagtaaggcagctggctgaagacttcttaaaagaatatgtacacatcaacatcggtgca
ttggaactgagtgcaaaccacaacattcttcagattgttgatgtgtgccatgatgtagag
aaagatgacaagcttattcgtctgatggaagaaatcatgagtgagaaggaaaacaaaaca
atagtttttgtggaaaccaaaagacggtgcgatgatcttaccagaaaaatgaggagagat
gggtggccagcaatgggtattcatggtgataaaagtcagcaggaacgagactgggttcta
aatgagttcaaacatggaaaagcaccaatcctgattgctacagatgttgcatccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggac
tatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagcatacacattc
tttactcctaacaatattaagcaagtaaatgacctcatctctgtgcttcgggaggctaat
caagccatcaaccccaaattgcttcagctgattgaagacagaggttcaggtcgttcccga
ggtgaccgacgtgacagatattctgcgggcaaaaggggtggatttagtagttttagagag
agggagaattttgagagaacctatggtgcactaggaaagagagactttggagcaaaagct
caaaatggggcctacactgcccaaagtttcagtaatggaactccttttggaaatggtttt
gcagctgcaggcatgcaagctggcttcagggctggtaaccctgcgggagcttaccagaat
ggctatgaccagcagtatggaagtaacattgcaaatatgcacaatggcatgaaccaacag
cagtatgcatatcctgccactggtgctgctcctatgataggttacccaatgccagcaagt
tattctcaataa
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