Cygnus atratus (black swan): 118254096
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Entry
118254096 CDS
T09349
Symbol
NUP88
Name
(RefSeq) nuclear pore complex protein Nup88
KO
K14318
nuclear pore complex protein Nup88
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118254096 (NUP88)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118254096 (NUP88)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
118254096 (NUP88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
STX6_10_61_N
Sec10_HB
Motif
Other DBs
NCBI-GeneID:
118254096
NCBI-ProteinID:
XP_035414974
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Position
20:4164236..4174184
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AA seq
728 aa
AA seq
DB search
MAAEWGPAEQWRAALPQHAVLGRLRERAAAAAGPSRPGAGPRAALSRNLLLGLDGDLLLW
DGESGALHAISLRRLGGPEPGLGHYQTLLCINPPLFEVYQTLLSPTQHHVALVGTKGLTA
LELPKRWGKNSEFEGGKATVNCSTIPIAERFFTSSTSLTLKHAAWYPCETLEPHIVLLTS
DNTIRIYSLKVPQTPIKVITLSDSEEETLTINKGRAYTASLGETAVAFDFGPLVPVPKNV
LGQRGRDEVLAYPLYILYENGETFLTYISLIQSTGNLGKLLGPLPMHPAAEDNYGYDACA
VLCLPCVPNILVIATESGMLYHCVVLDAEEDDEQSEKSWDPRSDLIPSLYVFECVELELA
LKLASGDEEEPLESDFSCPIKLHQDPKCPSRYHCTHEAGVHSVGLTWINKLHKFLGSDEE
DKDSLQELGAEQKCFVEHILCTKPLPCRQPAPIRGFWIVSDILGPTMICITNTYECITRP
LLSTVHPASPPLLCTREDKDVAVSPLRILADSQHSFEKHIRSILQRSTANPLLLKSADKD
AAPPPEECLQLLSRATQVFREEYILKQDLAKEEIQQRVKLLLGQKKKQLEDLNYCREEKK
SLREMAERLADKYEEAKEKQEDIMNRMKKVLRSFHSQLPVLSDSEKDMKKELQTIHDQLQ
HLSNAIRQVKMKKEYQQKKMEKGTSPRKPSITLSAYQSKCIQTVLKEEGEHIREMVKQIN
DIRSHVNF
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgagtggggcccggcggagcagtggcgcgcggccctgccgcagcacgccgtg
ctcggacgcctccgcgagcgcgcggccgccgccgccggcccctcgcggcccggggccggt
ccgagggcggcgctgagccgcaacctgctgctgggcctggacggggacctgctgctgtgg
gatggcgagagcggcgccctgcacgccatcagcctccgccgcctcggcggccccgagccg
gggctgggccattaccagacgctgctgtgcataaacccgccactgttcgaggtgtaccag
acgctgctgagccccacgcagcaccatgtggcgcttgtcggcaccaaggggctcacagcc
ctggagctgcccaagcgctggggcaagaactctgagttcgagggtgggaaggcgacagtg
aactgcagcaccattcccatcgctgaaaggttcttcacaagctcgacgtctctgactttg
aagcacgccgcgtggtatccctgcgagacgttggagccccacattgtgctcttgacttca
gataacacgataaggatttacagcctgaaggtacctcagacgcccatcaaagtgattact
ctttcagattcagaggaggagactcttacaatcaacaaagggagagcctacacagcatca
ctgggagagactgcggtggcgtttgactttggcccgctggtgccagtcccaaagaacgta
cttggacagcgagggcgcgatgaagtgctggcttacccgctgtacatcttatatgaaaat
ggagagacgttcctcacgtatatcagcctgatacagagcactggaaatcttggcaagctg
ctcggccctttgcccatgcaccctgctgcagaagataattacggctatgatgcctgtgct
gtcctttgcctgccttgtgttccaaacatcctggtgattgccactgaatcgggaatgctt
tatcactgtgtggtactggatgcagaagaggatgatgagcagtcagaaaagtcatgggac
ccaagatctgatcttattccttccctgtacgtgtttgaatgtgttgagctggaacttgca
ctgaaactggcatcaggagatgaggaagagcctttggagtctgatttctcttgcccaatc
aaactgcatcaagatccaaaatgtccctctagataccactgcacacatgaagctggtgtc
catagcgtggggttgacgtggatcaacaaactgcacaaattccttggttcagatgaagaa
gataaagacagtttacaggagctgggcgcagaacagaagtgctttgttgaacacattctt
tgtacaaaaccattgccatgcaggcaacctgctcctatcagaggattttggatagtctct
gacatcctggggcctacgatgatctgcatcacaaatacctatgagtgtattacaaggccg
ctcttaagtacagtccatcctgcatcccctcctctactgtgtaccagggaagacaaagat
gttgctgtttcccctctccggatcctggctgactcccagcactcgtttgagaagcacatc
cgaagcatcttgcagcgtagtactgccaatcccttgctcctgaaatctgctgataaagac
gctgctcctccccctgaagaatgccttcagcttcttagcagagccacacaagtgttcaga
gaagaatatatactgaaacaagatttggcaaaagaggaaattcaacaaagagtgaagctg
ctgttggggcagaaaaagaagcaactagaagatctgaattactgtcgagaagaaaagaaa
agtttgcgggaaatggctgaacggttggctgacaagtatgaggaagctaaagagaagcaa
gaagatattatgaataggatgaagaaagtacttcgtagtttccactctcagcttcctgtt
ctatcagacagtgaaaaagatatgaagaaggaattgcagacaatacatgaccagctgcag
cacttgagcaatgcaatcagacaggttaaaatgaagaaggaataccagcagaaaaagatg
gaaaaaggtactagcccacgaaaacccagcatcaccctcagtgcctaccagagcaagtgc
atccaaaccgttctgaaagaagagggagaacacataagggaaatggtaaaacagatcaat
gacatcagaagccacgtgaacttctaa
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