Cygnus atratus (black swan): 118254113
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Entry
118254113 CDS
T09349
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118254113 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cata03041
]
118254113 (PRPF8)
Spliceosome [BR:
cata03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118254113 (PRPF8)
Complex C
U5 SnRNP specific factors
118254113 (PRPF8)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
118254113
NCBI-ProteinID:
XP_035415000
LinkDB
All DBs
Position
20:complement(6380981..6401003)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAAVFPYRGACAPVPSPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLKDNRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
VAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQGSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcttcccgtaccgcggggcctgcgccccggtgcccagcccgctggcgccg
ctgcccgactacatgtctgaggagaagctgcaggagaaagcccgcaagtggcagcagctg
caggccaagcgctacgccgagaagaggaaattcggcttcgtggacgcgcagaaggaggac
atgccccccgagcacgtccgcaagatcatccgcgaccacggcgacatgaccaacaggaag
ttccgccacgacaaacgcgtctacctgggtgctctgaagtacatgcctcatgctgttctg
aagctcttggagaacatgcccatgccgtgggagcaaatcagagacgttccagtcttgtac
catatcacgggagccatctcttttgtgaatgagattccctgggtcatagagccggtgtac
atcgcccagtgggggtcgatgtggattatgatgaggcgagagaagagggataggcgtcac
ttcaagaggatgaggttccccccgtttgatgacgaagagccacctctggattatgccgat
aacatcctggatgtggagcccctggaagcaattcagcttgagctggatccagaggaagat
gcccctgtgctagactggttctacgaccaccagccactgaaagacaacaggaagtatgtc
aatggttccacgtaccagcggtggcagttcactctgcccatgatgtccacgctgtaccgg
ctggccaatcagctgctcaccgacctggtggatgacaactacttctatttgtttgacctg
aaagcattcttcacctccaaggcgctgaacatggctattcctggaggtcccaagttcgag
cctctcgtcagagatatcaatctgcaggatgaagactggaatgaatttaatgacatcaac
aaaattatcatcaggcagcccatcaggacggagtataaaattgctttcccttacctgtac
aataacctgccccaccacgtccacctgacctggtatcatactccaaacgttgttttcatt
aaaaccgaagatcccgatctcccagctttttacttcgatcccctgatcaaccccatttca
cacagacattctgtaaagagtcaggaaccattgcctgatgatgacgaagagtttgagtta
ccagagtttgtggaacctttcctgaaggacactccactctacacagacaacacagccaac
ggcattgccctgctgtgggccccacggcccttcaacttgaggtctgggaggactcggaga
gctcttgacatcccactggtcaaaaactggtatcgtgagcattgcccagcaggccagccc
gtgaaagtgcgagtctcctaccagaagctactgaagtactatgttctgaatgcgctcaag
cacagaccccccaaggcccagaagaagaggtacctgttccgctccttcaaggctacaaag
tttttccagtcaacgaagctggactgggtggaagtaggcctgcaggtgtgtcgccagggc
tacaacatgctgaacctgctgatccacagaaagaacctgaactaccttcacttagattac
aacttcaacctgaagccagtgaagaccctcaccaccaaggaaaggaagaaatcccgtttc
ggtaacgctttccatctgtgccgagaggttctgcggctgactaaactggtggtggacagc
cacgtccaatacagactgggaaacgtggatgcgtttcagttggcagacggcttgcagtac
atctttgcccatgtgggtcagctgacaggaatgtacagatacaagtacaaactgatgagg
cagattcgcatgtgcaaggacctgaaacatctcatctactacaggtttaacacagggcct
gtgggcaaaggtcctggctgtggcttctgggctccaggctggagagtgtggctgttcttc
atgaggggcatcacgccactgctggaacgctggctggggaatctgctagccaggcagttt
gaaggccgtcactcaaagggtgtagcaaagacagtcacaaagcagcgcgtggagtctcac
tttgacctggagctgagggcagccgttatgcatgacattctggacatgatgccagaaggg
atcaaacagaacaaagccagaaccatcctgcagcatctgagcgaggcttggcggtgctgg
aaggccaatatcccctggaaggttcccgggctgcccactcctattgagaacatgatcctg
aggtacgtgaaggcaaaagctgactggtggacaaatacagctcactacaatagagagcgt
atccgtcggggagccactgtggacaagactgtctgtaagaagaatctgggccggctgacc
agactgtacttgaaagctgagcaggaacgacagcataattacttgaaggatgggccttac
atcacagcagaagaggctgttgctgtgtacacaaccacagtgcactggctggaaagcagg
aggttctcacccattccattcccacctctgtcctacaagcatgacaccaagttgctcata
ttagctctggagaggctgaaggaagcttacagtgtgaagtctcgcctgaatcagtcgcag
agggaggagttgggcttgattgaacaggcgtatgataatcctcatgaagctctgtccaga
atcaaacgacaccttttaactcagagagccttcaaggaggtgggtattgagttcatggat
ctctacagccacttggttcctgtttatgacgttgagcccttggagaaaatcacagatgct
tatctggatcagtacttgtggtacgaggctgataagcgaagactcttccctccttggatc
aaacctgctgacactgaacctcctccactgttagtgtacaagtggtgccaaggcattaat
aacctgcaggatgtttgggaaacaagtgaaggtgaatgcaacgtgatgctggaatctcga
tttgagaagatgtatgaaaagattgacctgacgttgctcaacaggctgttgcgtctcatt
gttgatcacaacatcgctgactacatgacagccaaaaacaacgtggtgatcaactacaag
gacatgaatcacaccaactcctatgggattattcgtgggctgcagtttgcttccttcatt
gtccagtattacgggcttgtgatggacctgctggtgctgggtctgcaccgtgccagcgaa
atggctgggcctccccagatgccaaatgacttcctcagcttccaagacattgcaactgag
gtggcccatcccatccgccttttctgtagatacattgaccgcattcacatcttcttcagg
tttacagcagatgaggcaagagacttgattcagcgctacctgacggagcatccagatccc
aacaacgagaacatcgtaggctacaacaacaagaagtgctggccccgggatgctcggatg
cgcctcatgaaacatgacgtcaacctgggtcgtgccgtattttgggatatcaagaaccgc
ctgcctcgatcagtcaccacagtacaatgggagaacagcttcgtctccgtttacagcaag
gataaccccaatttgttgtttaacatgtgtggttttgagtgccgtattttgcccaaatgt
cgcaccagctacgaggagttcacccacaaggacggtgtctggaacctgcagaacgaggtc
accaaggagcgcacagcccagtgcttcctgcgtgtggacgatgagtccatgcagaggttt
cacaacagagtgaggcagatcctcatggcctctggctctacaaccttcactaagattgtc
aacaagtggaacacggctctgattggcctgatgacatatttccgggaagctgttgtaaat
actcaggagctgcttgatttgctggtgaagtgtgagaacaaaatccagactcgaatcaaa
attgggctgaattccaagatgcctagccgttttccaccagtggtgttttacacccctaaa
gagctgggagggctgggcatgctctccatgggccacgttctcatcccacagtctgacctg
aggtggtccaagcagacagacgtcggcattactcacttccgctcaggaatgagtcacgag
gaggaccagctcatcccaaatttgtaccgttacatccagccatgggagagtgaattcatc
gactctcagagagtatgggcagaatatgccctcaagcgacaggaggctatagcccagaac
aggcgtctgacgctggaggatctggaggactcatgggacagggggattcctcgtataaac
acacttttccagaaggaccggcacaccctagcgtatgataaaggatggagagtcaggact
gacttcaaacagtatcaggtcctgaaacagaacccgttctggtggacacatcagcgccac
gacgggaagctctggaacctgaacaactaccgcacggacatgatccaggcacttggtgga
gtggagggcatcctggagcacactctcttcaagggcacttacttccccacgtgggagggt
ctgttctgggagaaggccagtggctttgaggagtccatgaagtggaagaagctgacaaat
gcccagagatccggtttgaatcaaattccaaacagaagattcactctgtggtggtctcct
accattaacagagccaatgtgtatgttgggtttcaggtgcagctggatttgacaggtatc
ttcatgcatggcaagatccccacgctgaagatttctctcattcagattttccgagctcac
ttgtggcaaaagatccatgagagcattgtaatggatttgtgtcaggtgtttgatcaagag
ctggatgctctggagattgagacagtgcagaaagagacaatccatcccaggaagtcatac
aagatgaattcctcatgtgcagatatccttctctttgcttcctataagtggaatgtgtca
cgcccgtcattgcttgcagattccaaagatgtgatggacagcaccaccactcagaagtac
tggatagatatccagctgcgctggggagattacgattcccatgatattgagcgctacgca
agagccaagttcctggactacactacagacaacatgagtatctatccatctcccaccggt
gtgctcattgccatcgatctggcctataacttgcacagtgcttacggcaactggttccct
ggcagcaaacctctgatccagcaggctatggccaaaattatgaaggcaaatcctgcgctg
tatgtgttgagagagcgaatccgcaaggggttgcagctgtactcatctgagcccacagaa
ccatacctttcctctcagaactatggagagctcttctccaaccagatcatctggtttgtg
gatgacaccaacgtgtacagagtgaccattcacaagacttttgaagggaatttgaccaca
aaacccatcaacggagccattttcatcttcaatcccaggaccggacagctcttcctgaag
atcatccatacatctgtgtgggcaggacagaaacgtctcggacagctggccaagtggaag
actgctgaagaagtggctgccttgattcgatcgcttcccgtggaggagcagcctaaacag
atcatagtgactcgaaagggcatgttggacccacttgaggtgcacttgctggatttcccc
aatattgtgatcaaaggctcagagttgcagctgcctttccaggcctgtctgaaagtggag
aagtttggtgatctcatcctgaaggctactgaaccccagatggttctcttcaatctctat
gatgactggctgaaaaccatctcttcctacacggcattctcccgcctgattctgattctt
cgtgcactacatgtgaataatgatcgagccaaagtgattctgaaaccagacaagacaacc
ataacagagcctcaccacatctggccaaccctgacagacgaggaatggatcaaggtggag
gtgcagctgaaagatctgatccttgctgactatggcaagaagaacaatgtgaatgttgca
tccctgacacaatcggagatccgagacattatcctgggcatggagatctctgccccctct
cagcagagacaacagattgcagaaattgagaagcaaaccaaggagcagtcgcaactgaca
gccacgcagacccgcaccgttaacaaacatggggacgaaatcatcacctccacaaccagc
aactacgaaacccagactttctcctccaagactgagtggcgagtcagagcaatttcagct
gccaacctccacctgagaacgaaccacatttacgtttcatcagacgatataaaggaaaca
ggctacacgtacattcttcccaagaacgtgttgaagaaattcatctgcatctcagatctg
cgggcccagattgctggttacctgtatggagtgagccctcctgacaacccccaagtgaag
gagattcggtgcatcgtgatggtgccccagtggggaacacaccagaccgtgcatctcccg
gggcagctgccgcagcacgagtatctcaaggaaatggaacctcttgggtggattcacacc
cagccaaatgagtccccgcagctgtcaccacaggatgtcaccacccatgccaaggtcatg
gctgacaacccctcctgggacggggagaagaccatcatcatcacctgcagttttacgcca
ggctcctgcaccctgacagcctacaaactgaccccgagcggctacgagtggggcaggcag
aacacagacaaagggaacaaccccaagggctacctgccatcccactacgagagggtgcag
atgctgctctcagatcgcttcctcggcttcttcatggttccagcgcaagggtcctggaac
tacaacttcatgggtgttcgccacgaccccaacatgaagtacgagctgcagctcgccaac
cccaaggagttttaccacgaagtccatcgcccctctcacttcctcaacttcgccctgctg
caggagggggaggtttactccgccgaccgggaggacctctacgcctag
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integrated database retrieval system
