Cygnus atratus (black swan): 118254119
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Entry
118254119 CDS
T09349
Symbol
RABGEF1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
118254119 (RABGEF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cata04131
]
118254119 (RABGEF1)
Membrane trafficking [BR:
cata04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
118254119 (RABGEF1)
Protein recycling
Other Rab GTPase associated proteins
118254119 (RABGEF1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
Motif
Other DBs
NCBI-GeneID:
118254119
NCBI-ProteinID:
XP_035415008
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All DBs
Position
20:6008618..6034074
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AA seq
571 aa
AA seq
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MALRGAEEGAQEENLRRTLEPRKDATLFLAPARVGHRKKMNLKSERRGIHVDQSELLCKK
GCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERLQREEEEAYASSQSTQGAQSL
TFSKFEEKKTNEKTRKVTTVKKFFTASSRAGAKKAAQEKIVKQGHLGRERNADNILRDLK
EIFTPSWELASPTEAELQESKSPSPSINRQASIETDRVSKEFIEFLKTYHKPGQDIYKQC
KLFLDAMNHKRDLSIEEQSECAQDFYQNVAEKLQTRWKVPPEKVEKAMDQIEKYIMTRQY
KYVFCPETTDDEKKDLAVQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDS
KRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITR
FCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRFMTGQTSPKKQESDSWS
PDVCLGVKQMYKNLDLLSQLNERQERIVSEAKKLEKDLIDWTDGVAKEVQDIVEKYPLEI
KPKNQALAAIDSENVENDKLPPPLQPQVYAG
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggcactgcgcggcgcagaggaaggagcacaagaggagaatttgaggaggaccttggag
ccccgcaaggatgcgaccctgttcctagctccagctcgtgtgggacacaggaagaaaatg
aacctgaaatctgaacgcagaggaattcacgttgatcagtcggagctcctgtgcaagaaa
ggatgtggttactatggcaatcctgcttggcagggcttttgctccaagtgctggagagag
gaataccataaggccaggcagaaacagattcaagaggattgggagctggcagagcggctt
cagcgtgaggaagaagaagcatatgccagtagtcagagtacccaaggggcgcagtccctg
accttttcaaaatttgaggagaagaaaaccaatgagaaaacacgaaaggtcactactgtg
aagaagttcttcactgcttcctccagagcaggagctaagaaggcggctcaagagaaaatc
gttaagcaaggacaccttgggagggagcgaaatgctgataacattctcagggatttgaag
gaaatttttactccctcctgggaactggcttcccctactgaagcagagctccaagaatcc
aagtctcccagcccttctataaacaggcaggctagcatcgagacagatcgagtatccaag
gaattcatagaatttctcaagacatatcataaaccaggacaagatatctataagcaatgt
aaattatttttggacgcaatgaatcataaaagggacttaagtattgaggagcaatctgaa
tgtgcccaggacttctatcaaaatgtagcagagaaattacagacacgctggaaagtgccc
cctgaaaaagttgagaaagcaatggatcagatcgaaaaatatattatgactcgacagtat
aaatacgtattttgtcccgaaacaactgatgatgagaagaaggatcttgctgtccagaag
agaatcagggctttgcactgggtaactccacaaatgctgtgtgttcctgtcaatgaagaa
attccagaagtctctgatatggttgtaaaagcaattacagatattatcgagatggattca
aagcgtgtgcctcgtgataaattagcatgcatcaccaagtgcagcaagcacatctttaat
gctataaagatcacaaaaaatgaaccagcttctgctgatgactttcttccaacacttata
tatattgttttgaagggaaacccaccccgtctgcagtccaacatccaatatataacacga
ttctgtaatccaagcaggttaatgacaggagaagatggctactattttaccaatctgtgc
tgcgctgtggccttcattgaaaaactggatgctcagtccttaaatctaagccaagaggat
tttgatcgttttatgactggtcagacatccccgaagaagcaagaatctgacagctggtca
ccggatgtgtgcctgggtgttaagcaaatgtataaaaacttagatctcctgtctcagttg
aatgagagacaggaaagaattgtcagtgaagccaagaagctggagaaagacctgatagat
tggactgatggagttgcaaaggaagtccaagatattgttgagaaatatccattagaaatt
aagccaaaaaatcaagccttagcagctattgactctgaaaatgtggaaaatgacaagctg
cccccaccactgcagcctcaggtttatgcaggataa
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