Cygnus atratus (black swan): 118254141
Help
Entry
118254141 CDS
T09349
Symbol
LIG3
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118254141 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cata03400
]
118254141 (LIG3)
Enzymes [BR:
cata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118254141 (LIG3)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
118254141 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
Synaptonemal_3
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
118254141
NCBI-ProteinID:
XP_035415043
LinkDB
All DBs
Position
20:complement(5417339..5432691)
Genome browser
AA seq
903 aa
AA seq
DB search
MAEQRYCVDYAKRGTAGCKKCKEKLVKGTVRIGKIVPNPFTESGGEMKEWYHVRCMFEKL
EKARATTKKIEDITDLEGWEELQDEEKELIQKHIAEATSKAASTPKKKATVQAKLTPTGQ
ITSPSKDPLAAVNPKKFSGFTAKPKNSEDVPANSSHKSSLSAKKSDPKHKDCLLREFRKL
CAMVADKPSYNVKTQIIQDFLKKGTGGDGFHGDVYLTIKLLLPGVIKIVYNLNDKQIVKL
FSRIFNCSQEEMIRDLEQGDVSETIRLFFEQSKSCPPAAKSLLTVQEVDEFLIQLSKLTK
EDDQQSVLHDITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQD
VVERVLKNQQEAEKMPGLKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKY
DGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFPGGHSMILDSEVLLIDNKTG
KPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLRERRKFLHDNMVEIPXPDP
LLRDEACLKSFGSGRYDHRVIREGLEGLVLKDIKGNYEPGKRHWLKVKKDYLNEGAMADT
ADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCAGGHDDATLARLQTELDMVK
ISKDPSKIPSWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRCTR
IRDDKDWKTATNLPQLKELYQLSKEKADFSVVAGEEEESTAGSSGENEGNSRSSTPHKTT
KTPPSKSPAKAKKPEGTKAITESPQKPEEKRGEKRKASEMDDNGKKPLLDIFTGVKLYLS
PSVKDFNKIRRYFIAYDGDLVPEFDTASATHVIGDIDENPGAKRVSPNWIWECIRKRRLV
APC
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcagcggtactgcgtggactacgccaagcgcggcacggccggctgcaagaag
tgcaaggagaagctggtgaagggcacggtgcgcatcgggaagatcgtgcccaaccccttc
accgagtccggcggggagatgaaggagtggtaccacgtcaggtgcatgtttgagaagctg
gagaaggcccgcgccaccaccaagaagatcgaggacatcacggacttggagggctgggag
gagctgcaggacgaggagaaggagctaatccagaagcacatcgcagaagctacttccaag
gctgcaagtacgccgaagaaaaaagcaacagtccaagctaagctcactcccacaggacaa
ataaccagtccctcaaaggatcccttagctgctgtcaatccgaagaaattctctggcttc
acagccaagccaaagaattcagaagatgtccccgcaaactcttcccacaagtctagtctg
tctgcaaaaaaaagtgatccgaagcacaaagactgcttgctgcgagagttcaggaagctc
tgcgccatggttgccgacaagcccagctataatgtgaaaacgcagatcatccaggacttc
ctgaagaagggaactggaggagatggttttcatggtgacgtatacctgaccattaagctg
ctgttaccaggcgtcattaaaattgtttacaacttgaacgataagcagattgtaaagctg
tttagtaggatttttaactgcagccaagaggaaatgatccgggacctggaacagggagat
gtctccgagaccatacgcctcttctttgaacagagcaagtcttgtcctccagcagctaaa
agtctcctgaccgtccaagaggtagatgagttcctaatccagctgtcaaagcttactaag
gaagatgaccagcaaagtgtgctgcacgatatcactcgcagatgtacgggcaacgacctg
aaatgcatcatcaggctaattaagcatgacctgaaaatgaatgctggtgcaaagcatgtg
ttggatgctttggatccaaatgcttacgaggcgttcaaagcgtcacgcaacctccaggat
gtggtagagcgagtcctgaagaaccagcaggaggccgagaagatgccagggctgaagcga
accctcagtgtgcaggcctccctgatgaccccagtgcagcccatgctggctgaagcctgc
aagtcaattgagtatgccatgaagaagtgcccaaatggcatgtatgcggagatcaaatac
gatggtgagcgagtgcaggtccataaaaacggagatcacttcagctacttcagccggagc
ctcaaacctgtccttcctcacaaagtagcacattttaaggacttcatcccccaggctttc
cctggcgggcacagtatgatcctggattcggaagttcttctaattgataacaaaactggc
aagccacttccttttgggactcttggtgtgcataagaaagctgctttccaagacgccaat
gtttgcttgtttgtgtttgactgcatctatttcaatgacatcagcctgatggacaggcct
ctgcgcgagcgtcgcaagtttctacatgataacatggttgaaatccccnaaccggatcct
cttctcagagatgaagcatgtctcaaaagcttcggatctggcagatatgatcaccgagtc
atccgtgaaggactggaaggactggtgttgaaagatataaagggtaattatgaaccagga
aaacggcactggctgaaagtgaaaaaggactacctaaatgagggtgcaatggctgacaca
gcagacttggtggtgctgggagctttctatgggcaaggcagcaaaggtgggatgatgtcc
attttcctcatgggctgctatgatcccaagagtgagaagtggtgtactgtgaccaagtgt
gctggtggccacgacgatgccaccttggcccgtctgcaaacagagctggatatggtgaag
atcagcaaggatcccagtaaaattccaagctggctaaaaattaacaaaatctactaccca
gacttcattgtcccagatccaaagaaagccccagtatgggagatcacgggagctgaattc
tctaaagcagaagcccacactgcagatgggatctccattcgcttccctcgctgcacccgc
attcgagatgacaaggactggaagacagccaccaacctcccgcagcttaaggagctgtac
cagctctccaaagaaaaggctgacttcagtgttgttgctggggaggaagaagagtccacg
gctggcagcagtggagagaatgagggaaattccaggtcttccacgccacacaagactact
aaaactcccccaagcaagtcacctgcaaaagccaagaagccagaaggtactaaagcgatc
actgaatcccctcaaaagccagaggagaaacgaggagagaagcgaaaagcatctgagatg
gatgacaatggaaagaagccactgctggacatattcactggtgtgaagctgtacctatcg
ccctccgtgaaagatttcaacaaaatccgtcgctacttcatagcatacgatggtgatctt
gtgccagagtttgacacagcctcagcaacgcatgttataggggacattgatgagaatcct
ggtgctaagcgtgtatctcccaactggatctgggaatgcatacgcaaacggagactggta
gccccatgctag
DBGET
integrated database retrieval system
