Cygnus atratus (black swan): 118254162
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Entry
118254162 CDS
T09349
Symbol
SCARF1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118254162 (SCARF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cata04131
]
118254162 (SCARF1)
Membrane trafficking [BR:
cata04131
]
Endocytosis
Phagocytosis
Scavenger receptors
118254162 (SCARF1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_PEAR1L
EGF_Teneurin
EGF_2
Motif
Other DBs
NCBI-GeneID:
118254162
NCBI-ProteinID:
XP_035415079
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Position
20:complement(6370410..6375075)
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AA seq
862 aa
AA seq
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MASARPLLCLQLWLWVQGSAQELDPDGRNVCKVDSPPAGLACCPGWKQEGRECTAALCEG
EDTCGPDEVCVKPGLCRCKPGFFGADCSSRCPAQYWGPDCKQRCPCHPGGTCEAASGRCT
CDPDRWGELCQFPCQCGPHGRCEPLTGACRCEPGWWSPSCKKQCQCNAASSHCDPLTGHC
RCLPGWWGRRCSFKCSCNLSPCAQETGKCECKAGFWGPACQRRCDCLHGSCNPLTGHCSC
VPGYQGRSCREPCPAGKYGSQCVHSCGSCKRSQPCSPVDGFCLACQPGWNGTLCKERCAA
GFHGEGCLQPCPRCRHGDACDAETGSCLHCEPGWMGPSCNSSCPAGTFGDGCRLLCPECV
WGSCDPVSGACLCQAGYWGPSCNDTCPEGYFGANCSSPCQCSRGPCHPVRGDCMLSLDRG
ALAAAILVPLLLLLLCVVCCCCSAGPADARDRAAVPDDDVVARMKHHVQGVLANLSAMMP
CFSLGGYKLPKVTVSHHDAEIPFNPSFIESPSAAWVSDSSFSSFDTDNEGPEYSVPPREG
VPLLEGTELQDGASSPGEVLPDPAAFSSEDVSQPFAIPRTSSIAKAKRPSVSFAEGTKFG
AAETPSPGRKPKTPWGMAKLSPTSGDTGDEPPTEQPASDGYESPDPLAKGDESHRPSPRA
TPGGRRRVVSGTRHVAQRVEALEAAAKSSSWDAKGKEPNVTTIYMMVGTAGQDPKAEGGG
EGPVQAVLKRLGSLQKGKWAAKEDPKVRRSVEAIQKPPRRALAQRRDSANSCKQRESVPG
ATGEQRPGKQQHLPGKRQSFPLASALLKGTGAQDGAGDAMEKGKSLEVALSLETKGQAAP
EEEPKYETVSGSEDVPAAPAAT
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgcccggccgctgctgtgcctgcagctgtggctgtgggtgcagggctctgcc
caggagctcgaccccgacggcaggaatgtctgcaaggtggacagcccccccgcgggcctg
gcgtgctgccccggctggaagcaggaagggcgggagtgcacggccgcgctgtgtgaaggg
gaggacacctgtgggccggacgaggtgtgcgtgaaacccgggctttgccgctgcaaaccc
ggcttcttcggcgcagactgcagctcccgctgccccgcgcagtactggggccccgactgc
aagcagcggtgcccgtgccaccccggcgggacgtgcgaggcggcgagcgggcgctgcacc
tgcgaccccgatcgctggggcgagctgtgccaattcccctgccagtgcgggccccacggc
cgctgcgagcccctgaccggcgcctgccgctgcgagccgggctggtggtcccccagctgc
aagaagcagtgccagtgcaacgccgccagctcgcactgcgaccccctcaccgggcactgc
cgctgcctgccgggctggtggggcaggaggtgcagcttcaagtgctcctgcaacctctcg
ccctgcgcccaggagacgggcaagtgcgagtgcaaggctgggttttgggggccggcgtgc
cagcggcgctgcgactgcttgcacggctcctgcaaccccctcaccgggcactgcagctgc
gtccccgggtaccagggaaggagctgccgggagccctgcccggcggggaaatacgggtct
cagtgtgtgcacagctgcggaagctgcaagcgcagccagccctgctcgcccgtggacggc
ttctgcctggcgtgccagcccggctggaacgggaccctgtgcaaggagcgttgcgccgct
ggcttccacggtgagggctgtctccagccgtgcccccgctgccgacacggggatgcctgt
gatgcggagaccggatcgtgtctgcactgcgagcccggctggatgggacccagctgcaac
agctcctgccccgcgggcaccttcggggacggatgccggctcctctgccccgagtgcgtt
tgggggagctgcgaccccgtgtcgggtgcctgcctctgccaggctggctactggggaccc
agctgcaacgacacctgcccggaggggtattttggcgcaaactgttcctccccgtgccag
tgctcccgagggccctgccaccctgtgcggggcgactgcatgctgagtctggaccgcggg
gccctggccgctgccatcctcgtccctctcctcctgctgctgctctgcgttgtctgctgc
tgctgcagcgccggccccgcagacgctagagacagggcggccgtgccggacgacgatgtg
gtggccaggatgaagcaccacgtgcagggggtgctggcgaacctcagcgctatgatgccc
tgcttttccctgggtggctacaaacttcccaaagtcacagtttcccaccacgacgcagaa
atccccttcaaccccagcttcattgagtcgccctcggccgcctgggtttcggacagctcc
ttctcctccttcgacactgacaacgagggacccgagtactctgtccctcccagagaaggt
gtcccgctgctggagggcaccgaactgcaggatggggcctcctccccaggcgaggtgctc
ccagacccggccgccttcagctccgaggacgtctcacagcccttcgccatcccccgcacc
tccagcatcgccaaggccaagcggccttccgtctcctttgccgaggggacgaaattcggt
gcggcggagacccccagccccgggcggaagcctaagaccccgtgggggatggccaagctg
tctcccacatcaggggacacaggggacgagccccctactgagcagccggccagcgatggc
tatgagagccccgatcccctcgccaagggggacgaaagccaccggccatcaccccgggcc
accccggggggccgccggcgggtggtctccggcaccaggcatgtggcccagagggtggaa
gccctggaagcagccgccaaaagcagcagctgggacgcgaaggggaaggagcccaacgtc
accaccatctatatgatggtgggaacggccgggcaggaccccaaagccgagggtggtggc
gagggaccggtccaggccgtgctgaagcggctggggagcctgcagaaaggcaagtgggcc
gccaaggaggatcccaaggtgcggaggagcgttgaggccatccaaaaaccaccccgccgg
gccctggcgcagcgcagggactcggcgaacagctgcaagcagagggagagcgtcccgggg
gctacaggtgagcagcgccccggcaaacagcagcacctccccgggaagagacagtccttc
ccgctggcatcggccctgctgaaaggcaccggggctcaggatggggctggcgacgccatg
gagaagggcaaaagcctggaggtggccctgagcctggaaacgaagggccaggctgcccct
gaggaagagcccaaatacgagaccgtgagcggcagtgaggatgtgccggccgcccctgcg
gccacctga
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