Cygnus atratus (black swan): 118254466
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Entry
118254466 CDS
T09349
Symbol
DDX41
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41 isoform X1
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
118254466 (DDX41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cata03041
]
118254466 (DDX41)
Enzymes [BR:
cata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118254466 (DDX41)
Spliceosome [BR:
cata03041
]
Complex C
Other components
Complex C specific factors
118254466 (DDX41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
zf-CCHC
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
118254466
NCBI-ProteinID:
XP_035415594
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All DBs
Position
14:9369027..9375110
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AA seq
704 aa
AA seq
DB search
MEAAAGRKRQREEAAESSELSGEEEDADYVPYVPVKQRKQQMLQKLLQMRRKVVSEEEQR
DSGGEQRGDEDDIPLGPQSNISLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGR
ALMSVKEMAKGITYDDPIKTSWRAPRYILGMSEARHDRVRKKYHILVEGEGIPPPIKSFK
EMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCL
EQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDGLPPLRCALCIGGMSVK
EQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSY
FKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYL
LECLQKTPPPVSNALWLPRARRSPQLGAGWQRGRGRGAARLCPAWGRAQEGAALRVGAGP
GAVAAPVRREGTGFSGRRALCQHAQAASAKVSASWQVLIFAEKKADVDAIHEYLLLKGVE
AVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH
RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHCGDETMLEIGG
ERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDYLAHSSMDF
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgcggcgggcaggaagcggcagcgggaggaggcggccgagtcgtccgagctg
tccggggaggaggaggacgctgactacgtgccctacgtgccggtgaagcagcgcaagcag
cagatgctgcagaagctgctgcagatgcggcggaaggtggtgtcggaggaggagcagcgg
gacagcggcggcgagcagcgcggcgacgaggacgacatccccctggggccgcagtctaac
atcagcctgctggaccagcaccagcacctcaaggagaaagcggaagctcggaaggagtca
gccaaagagaagcagctgaaggaggaggagaagatcctggagagcgtggcggagggccga
gccctgatgtcagtgaaggagatggcaaagggtatcacctatgatgatcccattaaaacc
agctggagagcacctcgttacatcctgggcatgtccgaggcccggcacgatcgcgtccgc
aagaagtaccacatcctggtggagggggagggcatcccgcctcccatcaagagcttcaag
gagatgaagtttccagcagctatcctgaggggcctgaagaagaagggaatccagcagcca
acgcctatacagatccagggcatcccaacgatcctctcgggaagggatatgatcggcatt
gccttcactggctctgggaagaccttggtgttcaccctccccgttatcatgttctgcctg
gagcaggagaagaggctgcccttctccaagcgggagggaccctacgggctcatcatctgt
ccctcccgggagctggcccggcagacgcacggcatcatcgagtactactgccgcctgctg
caagaggacggcctgcccccgctgcgctgcgccctctgcatcgggggcatgtccgtcaag
gagcagatggagaccatcaaacatggcgtgcacatgatggtggcgaccccgggccgcctc
atggacctgctgcagaagaagatggtgagcttggacatctgccgctacttggccttggac
gaggctgacaggatgatcgacatgggcttcgagggggacatccgcaccatcttctcctac
ttcaagggccagcggcagacgctcctcttcagtgccacaatgcccaagaagatccagaac
tttgccaagagtgccctggtgaagcccatcaccatcaacgtagggcgagcgggtgctgcc
agcctggacgttgtgcaggaagtggagtacgtgaaggaggaggccaagatggtgtacctc
ctcgagtgcctgcagaagactccgccacccgtgagtaacgcgctctggctgccccgggca
cgccgcagcccccagctgggtgctggctggcagcggggacgtggccgtggcgctgccagg
ctctgccctgcgtgggggcgggcgcaggagggagccgcgctccgtgtcggtgctgggcct
ggagctgtcgcagccccagttcggcgggagggaacgggtttctcggggcgccgtgctctt
tgccagcacgcgcaggccgcttctgccaaggtgtctgcgtcgtggcaggtgctgatcttt
gcggagaagaaggccgacgtcgatgcgatccacgagtacctgctgctcaagggggtggag
gctgtggccatccatgggggcaaagatcaggaggaacggacgaaagccatcgaggccttc
cgggacgggaagaaggacgtgctggttgccaccgatgtcgcttccaagggcctggacttc
ccggccatccagcacgtcatcaactacgacatgccggaggagatcgagaactacgttcac
cgcatcgggcgcacgggccgttcaggcaacaccggcattgccaccaccttcatcaacaaa
gcctgcgacgagtcggtgctcatggacctgaaggctctgctcctggaggcgaagcagaag
gtgccacccgtgctccaggtgctgcactgcggggacgagaccatgctggagatcggaggg
gaacgcggctgcgccttctgcggcggcctgggccatcgcatcacggactgccccaagctg
gaggcgatgcagaccaagcaagtcagcaacatcggccgcaaggactacctggcccacagc
tccatggacttctag
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