Cygnus atratus (black swan): 118254971
Help
Entry
118254971 CDS
T09349
Symbol
RAD50
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03440
Homologous recombination
cata03450
Non-homologous end-joining
cata04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118254971 (RAD50)
03450 Non-homologous end-joining
118254971 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
118254971 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cata03032
]
118254971 (RAD50)
03400 DNA repair and recombination proteins [BR:
cata03400
]
118254971 (RAD50)
DNA replication proteins [BR:
cata03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
118254971 (RAD50)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
118254971 (RAD50)
BRCA1-C complex
118254971 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
118254971 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
AAA_29
AAA_24
NPV_P10
DUF2703
AAA_13
Motif
Other DBs
NCBI-GeneID:
118254971
NCBI-ProteinID:
XP_035416687
LinkDB
All DBs
Position
14:complement(1758652..1779699)
Genome browser
AA seq
1312 aa
AA seq
DB search
MARIEKMSILGVRSFGIEDKDKQIITFLNPMTILVGPNGAGKTTIIECLKYVSTGDFPPG
TKGNSFVHDPKVAHETDVRAQIRLQFRDVNGELLAVQRSMVCTQKNKKTEFKTLEGVITR
TKHGEKASLSSKCAEIDREMISALGVSKSVLNNVVFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLNNREAQLSASKEN
VKSIESQLDPLKCSLAAVEKNLMKVMLLDNDVKALESRRRQMDKDNRDLQQKMEKVFQGT
DEQLRDRYQNHQRTVKEKEKRLSDCKRELDRAIKECQRFNSEKSELLVERGRLQLQADRH
QDHIKMRDSLIQSLAAQLELDGFELSPLNERQITSFHRLLKERQARDTETANHLMREFAQ
KEVMKQKQIDEIRDKKTGLERTIDLKSDIQNKRQVELKNVKHELQQLEGSSGRIVELDQE
IVKTEHELEKAERNSNVEALELEVQTLQNEKINLDKVLRKLDQEMEQLNLHTTTITQMEM
LKKDKADKEEQIRKVKSRHSEELTLLLGYFPNKKQLEDWLHGKNREINETRDRHAKLNKQ
LASAEQQKNFISAELRKKEEQLSSYEAKLFDVCGSQDFDSNLNKLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RREKKRDEMMGLKPIRQTVVELQERDIPDLRNKLQTVNRDFARLKGEIEEQETLLHTVLS
EKEGANACLQDITLMERYQADVRDVERKIAQQEAKLLGVDLSRTVLQVSQEKQEKKHLWD
TVTSKIELNQKIKQDQQNQIQQLKSTVNELRAEKLQISSSMQRRQQLEEQIVELTTEVQS
LYREIKEAKEQVFPLHETLEKLQQDKEDLINKRTATNKETQEKINSIKEKVKDINKYMKE
IESYVQEGKEDYKKQKESELDEVNSQLVACEKQKEKITKEMEIIRQDIDTQKIQERWLED
NLTLRKRNEELKEVEDNINRLMKEMGEMKVPQMKNEQKQLEEKIEALKRNHHVALGRQRG
FEEEIVRFKKELRESQFKDAEEKYREMMIVMRTTELVNRDLDTYYKALDKAIMTFHSMKM
EEINKIIRDLWRNTYRGQDIEYIEIRSDADENVSAADKRRSYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRTKQR
NFQLLVITHDEDFVELLGRSEYVETFYRIRKNDDQCSEIMKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggcaaggattgagaaaatgagtatcctcggggtgaggagttttggcatagaggataaa
gacaaacagattatcactttccttaatccaatgactattttggtgggaccaaatggtgca
ggaaaaacgactatcattgagtgcctcaaatatgtatctactggagattttccccctggc
accaaaggaaattcatttgttcacgatccaaaggttgcccatgaaactgatgttagagct
cagattcgattacagtttcgagatgttaatggagagcttttagctgtccaacgatccatg
gtttgtacccagaaaaacaagaaaacagaatttaaaacacttgaaggggtcattactaga
acaaagcatggcgagaaggccagtctcagttccaagtgtgcagaaattgatcgagagatg
atcagtgcccttggtgtttccaaatccgtgctcaacaatgttgttttctgccaccaagaa
gattccaactggccattaagcgaagggaaggccctgaaacaaaaatttgatgagatcttc
tcagcaacaaggtatattaaagcactggaaactctccgtcaggtacggctgaaacaaagc
ctaaaagtaaaagagtgtcagacagaactgaagtacctaaaacagaataaagaaaaagca
caggaaatccaggaccatcttaacaatagggaagctcagctgtctgcttctaaagagaat
gtaaaatctatcgagagtcagctggatcctttaaagtgttctctggcagcagttgaaaag
aatctcatgaaagtaatgttgctagacaacgacgtaaaagctctggagagcaggaggagg
cagatggataaagataaccgagatctgcagcagaagatggaaaaggtttttcaaggaacg
gatgaacagctaagggatagataccagaaccaccagagaacagtgaaggagaaggagaag
agattatcggactgtaagcgtgaattagatagagccattaaagaatgccagaggtttaac
agtgaaaagtcagaattactcgttgaacgaggtcgtctacaactgcaagcagatcgtcac
caagatcacatcaaaatgagggattcattaattcagtctttggcagcacaactagaatta
gatggttttgagctatcgcctcttaatgaaagacagattaccagttttcacaggttattg
aaggagagacaagcgagagatacagaaactgcaaatcacttaatgagagaatttgcacaa
aaagaagtgatgaaacaaaaacagatagatgaaataagagataagaaaactggattagaa
agaaccattgatctgaaatcagacatccaaaacaagagacaagtggaactgaagaatgta
aaacatgaattgcagcagttggaggggtcatcaggcagaattgtggagttggatcaggag
attgtcaagacagaacatgaactggagaaggctgagaggaacagcaatgtagaagcactc
gaactggaagtgcaaactctgcaaaatgagaaaataaacctggacaaagttcttcggaag
ttggatcaagagatggaacagttgaacctacataccacaacaattacccaaatggagatg
ctgaagaaggacaaagcagacaaagaggaacagattagaaaagtaaaatcaagacattct
gaagaactgacattactgctgggatactttccaaataaaaaacaacttgaagactggctt
catggcaaaaatagagagatcaatgaaacaagggacagacatgccaagcttaacaaacaa
ctggcgtcagcagaacaacagaaaaattttatcagtgctgaactaagaaaaaaagaagaa
cagttgtctagctatgaagcaaaactttttgatgtttgtggaagccaagattttgacagt
aacctgaacaaacttcaagatgaaattgaaaaaagttcaaaacagcgagctgtgcttgct
ggagccacagcagtttattcacagttcattacacaactgacagaagagaatcagtcgtgt
tgtccagtttgtcaaagagtttttcaaacagaggctgaactgcaagatgtaattagtgat
cttcagtctaagttgcgtcttgctccagacaaattgaagtcaacagagtctgagcttaaa
agaagagagaaaaaacgtgatgaaatgatgggtcttaaaccaattaggcaaactgtagtg
gaactccaagaaagggacataccagacttgaggaacaagctgcagactgtaaacagggat
tttgcacgcctgaagggtgagatagaagagcaggaaacactcttgcacacagttttgtct
gagaaggaaggtgctaatgcatgtttacaggacataacactaatggaaaggtaccaggct
gatgttagggatgttgaaagaaaaattgctcagcaggaggctaagttgctaggggtcgat
ttaagtagaaccgttctacaagtaagccaagaaaaacaagagaagaaacacttatgggat
acagttactagtaaaattgagttaaatcaaaaaatcaagcaagaccagcaaaatcagatt
cagcagcttaagagtacagttaatgaacttagagcagagaaacttcagatttccagcagc
atgcagcgtcgtcaacaactggaggaacaaatagtggaattaaccactgaggttcagtcc
ttatatagagagattaaggaagcaaaagaacaggtatttccactacacgaaacgttagaa
aaactgcagcaagacaaggaggatctaattaataaaaggactgcaactaataaagaaaca
caagagaagataaatagcataaaagagaaagttaaagatataaacaagtacatgaaagaa
atcgaaagctatgttcaagaaggaaaggaagactacaagaagcaaaaggagtctgaactt
gatgaagtaaactctcaattagttgcctgtgagaaacagaaggaaaagataactaaagag
atggaaattattcgacaagatattgacactcaaaagatacaggaaaggtggctggaggat
aatcttactttgaggaagcggaatgaagagttaaaagaagttgaagacaatataaataga
cttatgaaggagatgggagaaatgaaagtcccgcagatgaaaaatgaacaaaaacagtta
gaggagaaaatagaagctctgaaaagaaaccatcatgttgcacttggccgacagcgtgga
tttgaggaagagattgttcggtttaaaaaggaacttcgagagtcacaattcaaagatgca
gaggaaaaatacagggagatgatgattgttatgagaacaacggagctagtgaacagggat
ttggacacttattacaaggctcttgataaagcaataatgacatttcatagcatgaagatg
gaagaaatcaacaaaataattcgtgacctttggagaaatacctacagaggacaagatatt
gaatatatagaaattcgctctgatgcagatgagaatgtttcagcagctgataaaagaaga
agttacaattatagagtagtaatgataaagggagatacagcactggatatgagaggaaga
tgtagtgctgggcaaaaggtgcttgcttctcttattattcgtctggctctagcagaaacg
ttctgtctcaactgtggtatattggcactagatgagcctactaccaatcttgatcgagaa
aacattgagtctcttgcccatgccctcgtggagataataaaaagccgcacaaaacagcgt
aactttcagcttctggtgataactcatgatgaagattttgttgaactgctgggccgttct
gaatatgtggaaaccttctacaggatacggaagaacgatgaccagtgctctgagatcatg
aaatgcagtgtcagctcccttggctcatatgttcattag
DBGET
integrated database retrieval system
