KEGG   Cygnus atratus (black swan): 118255303
Entry
118255303         CDS       T09349                                 
Symbol
KDM5B
Name
(RefSeq) lysine-specific demethylase 5B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
cata  Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:cata00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cata01009]
    118255303 (KDM5B)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cata03036]
    118255303 (KDM5B)
Enzymes [BR:cata01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     118255303 (KDM5B)
Protein phosphatases and associated proteins [BR:cata01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     118255303 (KDM5B)
Chromosome and associated proteins [BR:cata03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    118255303 (KDM5B)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_2 Exo70_N Lipoprotein_20
Other DBs
NCBI-GeneID: 118255303
NCBI-ProteinID: XP_035417282
LinkDB
Position
24:complement(4526356..4582701)
AA seq 1521 aa
MAEFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDVDKLH
FTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLFQLNRLVAEEGG
FDVVCKERKWTKIATRMGFAPGKAVGSHIRAHYERILYPYNLFQSGASLLCLQKPDLASD
TKDKEYKPHDIPQRQSVQPSETCPPARRAKRLRAEATNMKTESEPSEARTHNLRRRMGCA
PPKCENEKEMYSSVKLPEKREHAGEPEKDKSKARSKKPTNAVDLYVCLLCGSGNDEDRLL
LCDGCDDSYHTFCLIPPLHDVPKGDWRCPQCLAQECNKPQEAFGFEQAARDYTLRTFGEM
ADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDGKF
KVRPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWS
YSINYLHWGEPKTWYGAPGYAAEQLEDVMKKLAPELFESQPDLLHQLVTIMNPNTLMAHG
VPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYC
VFSHDEMICKMASKAEFLDVVVASTVQKDMAIMIDDEKMLREKVQKLGVTDSERVAFELF
PDDERQCLKCKTTCFMSAVYCPCKPGLLVCLYHVEDLCSCPTYKYKLGYRYTLEELYPMM
NALKMRAESYNEWASNVNEALEAKINNKRSLVSFKALIEESEMKKFPDNDLLRHLRLVTQ
DADKCASVAQQLLNGKRQTRYRSGGGKSQNQLTVNELRLFVRQLYALPCVLSQTPLLKDL
LDRVEAFQQQSQKLLSEEMPCAAELQELLDVSFDFDVDLPQLAELRIRLEQARWLEDVQL
ASSDQNSLTLDDMRRLIDSGVGLAPYPAVEKAMAKLQELLTVSEHWDDKARNLIKARPRQ
SLSSLVAALKEIEEIPAYLPNGVALKDAVQKAKDWLQEVESLQVGGRVPVLDTLVELVTR
GRSIPVHLDYLLRLESLVSEVQAWKECAANTFLCENSPYSLLEVLCPRCDIGILNLKRKQ
KKLKEPVPSGKKKSTKLESLSDLERALSESKDTASAMATLGEARLKEMEALRSLRAANEV
KVLSNEEDAEMKVCLCQKEPAAPMIQCELCRGFFHTSCVSVPNILQGPRVWLCPHCHRSE
KPPLEKILPLLASLQRIRVRLPEGDALRYMIERTVNWQHRAQQMLYSGNLKLIQDKVGSG
LLYNRWQATAGHLPETNKVSQTIGAMSFSMPHDWDNRTIYLHSPFSTGQQCIPLHVISTE
LDELMMEAQLLQVSLPEIQELYQILFTKQSPALQTEQKSSVGPTNEKNECCRGKKDGISY
MERKLKRRFERESFCDEKRARVKKMRTPKKKKLKLNHSRDLCTNKLERERERLFEMQRSS
ESHLFPSDMSFSEQEDSEDEDAICPAVNCLQPEGDEVDWVQCDGSCNQWFHQVCVGISPE
MAEKEDYICISCTGKDSQYRK
NT seq 4566 nt   +upstreamnt  +downstreamnt
atggctgagttcctgcccccgcccgagtgccccgtcttcgagcccagctgggaggagttc
gccgaccccttcgccttcatccacaagatccggcccatcgccgagcagaccggcatctgc
aaggtgcggccgccgccggactggcagcctccatttgcatgtgatgttgataagcttcac
ttcactccgaggatccagaggcttaatgaactagaggcccaaacccgtgtaaagctgaat
ttcctggaccagattgcaaagttttgggaacttcagggatgtacgctgaaaattccacat
gtggagaggaagatcttggatttatttcagcttaatagactagttgcagaagaaggagga
tttgatgtagtttgcaaggagagaaaatggaccaaaatagccactagaatgggatttgct
cctggcaaagcagtgggttcgcacatccgtgcgcactatgagcgtattctctatccttac
aacttattccagtctggagctagcctattgtgtttgcagaaaccagatcttgctagtgac
acaaaggacaaggaatataagccccatgatattccacagagacagtctgttcagccgtct
gaaacttgtccacctgctcgtcgagcaaaacgcctaagagcagaggcaaccaatatgaaa
actgaatctgaaccttcagaggccagaactcataatctgagacgcagaatgggatgtgca
cctccaaagtgtgaaaatgaaaaggaaatgtatagttcagtgaaacttcctgagaagaga
gaacatgctggggagccagagaaagacaaatccaaagcccgatccaaaaaacctactaat
gctgtggatttgtatgtatgtctcttatgtggcagtggtaacgatgaggaccgtctcctg
ttgtgtgatggctgtgatgacagttaccatactttttgtttaattccaccccttcatgat
gttcccaaaggggactggaggtgcccccagtgtttggctcaggagtgtaataagcctcaa
gaagcgttcggttttgaacaagcagcaagagactatacgctgcgcacctttggagaaatg
gcagatgcattcaagtcagactattttaacatgccagtacatatggtccccactgagctg
gttgaaaaggaattctggagacttgttagtaccattgaagaggatgttacggtggaatat
ggagctgatattgcttcaaaggagtttggcagtggcttcccagttagagatgggaaattt
aaagtgagaccggaagaagaggaataccttgatagtggctggaatttaaacaacatgcct
gtgatggagcagtctgttcttgctcacatcactgcagacatatgtggaatgaaattacct
tggctatatgtaggaatgtgcttttcttcattttgttggcatattgaagatcattggagc
tattcgattaactatctgcattggggggagcctaaaacgtggtatggagccccaggttat
gcagcagaacagctggaggatgtaatgaagaagcttgctccagagctatttgaatctcag
ccagatctcttgcaccaacttgtcaccataatgaacccgaatactttgatggcccacgga
gtgcctgtttatcgaaccaatcagtgtgctggagagtttgtgatcacttttccaagagct
tatcacagtggcttcaatcagggtttcaattttgctgaagctgtgaacttctgcactgtt
gattggctgccattgggtcgccaatgtgtagaacattatcgtctgctgcaccgttactgt
gtgttttctcatgatgagatgatatgtaaaatggcttccaaagcagaatttcttgatgtt
gtggtagcatctactgttcaaaaagacatggctattatgattgatgatgagaagatgctg
cgcgagaaggttcagaaactgggagtgactgactcggagagagtggcttttgagttgttt
cctgatgatgagcgacagtgcttaaagtgtaaaaccacttgtttcatgtctgctgtttat
tgtccatgtaaacctggattactggtatgcttgtatcatgtagaggatctttgttcctgt
cccacctacaaatataaactggggtaccgctacactctggaggagctctatccaatgatg
aacgcattaaagatgcgtgcagaatcatacaacgaatgggcttccaatgttaatgaagct
ttggaggcaaaaattaacaataaaagaagtctcgtcagttttaaggctttgatagaagaa
tcagaaatgaaaaagtttccagataatgacctactgcgacacctcagactagttacacag
gatgcagacaaatgtgcctcagttgcgcaacagcttcttaatggcaaaagacaaaccagg
tatcgctctggaggagggaaatctcaaaatcagctgactgtgaacgagctccgtttgttt
gtaaggcagctgtatgctctgccctgcgtcctcagtcagacaccattactgaaggatctt
cttgatcgtgtagaagcttttcaacagcaaagccaaaaactcctttctgaagaaatgcct
tgtgctgcagaactccaggagctgttagatgtcagctttgattttgatgttgatttaccc
cagcttgctgagctgcggatacgtctggaacaggcacggtggctcgaggatgtgcaactc
gcttcctcagaccaaaactctcttactctagatgatatgagacgtcttatagactcaggt
gttggactggctccctacccagcggttgagaaagcaatggcaaagctgcaagagctcctt
actgtatctgaacactgggatgacaaagccagaaatctgataaaggccagaccacggcag
tcactgagcagtcttgtagcagcactgaaagaaatagaggagatcccagcctatctccca
aatggtgttgcactgaaagatgcagtgcagaaggccaaagactggctgcaggaagtggaa
tctttacaggttggaggtcgtgtgccggtactggacacgttagtggaactcgtcacaaga
ggtcgatctattccagtgcacctggactatctgctgaggctcgagtccttggtgtcagaa
gttcaggcatggaaggagtgtgcagctaacacatttctgtgcgagaactccccttactct
cttctggaggtgttatgtccccggtgtgatattggaatattgaatcttaaaagaaagcag
aagaagctgaaggagccagtgccaagcggaaagaagaaaagcactaagctagagagcttg
agcgacttagaaagagctctttctgagagcaaagacaccgcatctgcgatggctacgctc
ggggaagcccggttaaaggagatggaagcactgcggtctctccgagcagcaaatgaagtg
aaggtgctgtctaatgaagaggatgcagaaatgaaagtctgtctatgccagaaggagccg
gctgctccgatgattcagtgtgagctctgcagagggttcttccataccagctgtgtttcg
gtgcccaacattttgcagggacctcgtgtatggctctgtccacactgtcatcgatcagaa
aaaccacctctagaaaaaatcttgccgttgctggcctccttgcagcgtatccgtgtgagg
cttcctgagggcgatgccttacggtatatgatagagagaactgtgaactggcagcacaga
gcacaacaaatgttatattcagggaatctaaaacttatacaagacaaagttggctcagga
ttgttgtacaacagatggcaagccacagcaggccatttgccagagacaaataaggtttcg
caaacaattggagctatgtcattctccatgcctcatgactgggataacagaaccatatat
ttacattctccattttctacaggacagcaatgcatcccacttcatgtcattagcacagag
ctggatgagctgatgatggaagcccagctgctacaggtttctctgcctgaaatacaggag
ctgtaccagatcctattcacaaagcaaagccctgctttgcagacagagcagaagtcatca
gttggaccgacaaatgagaagaatgagtgttgccggggaaaaaaggatggaattagttac
atggaaagaaaactaaagcggcgttttgagagagagagcttctgtgatgagaagagagca
agggtaaaaaaaatgagaacacccaaaaagaagaaactgaaactgaatcactcaagggat
ctctgcactaacaaactggagagagagcgtgagcgactcttcgagatgcagcgttccagt
gaaagccacttgtttccctcagatatgtcattctctgagcaggaggactctgaggatgag
gatgccatctgccctgctgtgaactgtctccagcctgagggagatgaggtggattgggtc
cagtgcgatggcagctgcaaccagtggttccaccaggtgtgcgtgggcatctctccagaa
atggcagagaaggaggactacatctgcatcagctgcactgggaaggactctcagtatcgg
aagtaa

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