Cygnus atratus (black swan): 118255334
Help
Entry
118255334 CDS
T09349
Symbol
SOX13
Name
(RefSeq) transcription factor SOX-13
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cata03000
]
118255334 (SOX13)
Transcription factors [BR:
cata03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118255334 (SOX13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_WDHD1
HMG_box_2
CC_Bre1
DUF6586
Motif
Other DBs
NCBI-GeneID:
118255334
NCBI-ProteinID:
XP_035417327
LinkDB
All DBs
Position
24:complement(3190063..3196641)
Genome browser
AA seq
611 aa
AA seq
DB search
MSMRSPVSPHLELDGAGSMVNCTIKTEEKKEGGYESPPGAAPSAEPRPSDPPGPPPREAT
DPQALPQESHSPASDVLEPRRSAFEPAVSSQEKLDFNKNLKEVMPTIEKLLSSDWKERLL
GRNAAETKEVKGTQESLAEKELQLLVMINQLSTLRDQLLTAHSEQKNMAAMLFEKQQQQM
ELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFTPSHQPLPVTQDPQIA
LPIQPIPCKPVDYPVQLLHSPPPPTLKRPSGSSHLQMQETSQPLNLTAKPKGSELPSASS
SPSLKMSSCQSHTPSHGAARDLQTSPSNLPLGFLGEGDAITKAIQDARQLLHGHGGAMEG
ALSHPYRKDHVSIDTSPVKERLEEAPAHRLDEALLTCEMDGSRHFPESRNNNHIKRPMNA
FMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPD
YKYKPRPKRTCIVEGKRLRVGEYKALMRNRRQDARQGYLIGPQGSQMPPASSDVLYPRPV
GMQLTPPLMEHYLPRSMDPNMPVIVNTRSLKEGDGGDDGHSVADGEMYRYSEDEDSEGED
KSDGELVVLTD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaggagccccgtttctccccacctggagctcgatggggcgggcagcatggtg
aactgcaccatcaagacggaggagaagaaggagggcggctacgagtccccgccaggggct
gcccccagtgccgagccccgtcccagtgaccccccgggaccaccgccgagggaggccacg
gacccccaggccctgccgcaggagtcccactcgcctgccagtgatgtgctggagccccgg
cgctcggccttcgagccggctgtcagcagccaggagaagctggacttcaacaagaactta
aaagaggtgatgccaaccatcgagaaattgctgtccagcgactggaaggagcggctgctg
ggccgaaatgctgccgaaaccaaagaagtgaagggaacccaggagagcctggcggagaag
gagctccagctcctcgtcatgatcaaccagctgtccacgctgcgggaccagctcctgacg
gcgcactcggagcagaagaacatggccgcgatgctcttcgagaagcagcagcagcagatg
gagctggcgcggcagcagcaggagcagatcgcgaagcagcagcagcagctcatccagcag
cagcacaaaatcaacctgctgcagcaacagatccagcaggtcaacatgccgtacgtcatg
atccccgccttcacccccagccaccagcctctccccgtgacgcaggacccccagatagcg
ctgcccatccagcccatcccttgcaaaccagtggattaccccgtgcagctgctgcacagc
ccccctcctcccacgctgaagagacccagcggctcgagccacctccagatgcaggagacc
tcgcagccgctgaacctgacggccaaacccaaaggctccgagcttcccagtgcctccagc
tcgcccagtttgaagatgagcagctgccaatcccacacgccgagccacggggccgcgagg
gacctgcagaccagtccgtccaacctgcctctgggcttcctgggtgaaggcgatgccatc
accaaagccatccaggacgcgcggcagctgctgcatggccacggcggggccatggagggc
gcgctgagccacccctaccgcaaggatcacgtcagcattgacacttccccggtgaaggag
cggctggaggaggcccccgcgcaccgcctggacgaggcgctgctgacctgcgagatggac
ggctcgcggcacttccccgagtccaggaacaacaaccacatcaagcggcccatgaacgcc
ttcatggtgtgggcgaaggacgagaggaggaagatcttgcaagccttcccggacatgcac
aactccagcatcagcaagatcctgggctcccgctggaaatccatgacgaaccaggagaag
cagccctactacgaggagcaagcccggctgagccggcagcacctggagaagtaccccgac
tacaagtacaagccccggcccaagcgcacgtgcatcgtggaggggaagcggctgcgcgtg
ggcgagtacaaggcgctgatgcggaaccggcggcaggacgcgcggcagggctacttgata
gggccccagggcagccagatgccccccgcctcctcggacgtgctgtacccgcggccggtg
ggcatgcagctaacgccccccctgatggagcactacctgccccgcagcatggaccccaac
atgcccgtcatcgtcaacacgcgcagcctcaaggaaggcgacggcggggacgacgggcac
tcggtggccgacggcgagatgtaccgctacagcgaggacgaggactcggagggcgaggac
aagagcgatggcgagctggtggtgctgacggactga
DBGET
integrated database retrieval system