Cygnus atratus (black swan): 118255896
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Entry
118255896 CDS
T09349
Symbol
CNOT6L
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X2
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118255896 (CNOT6L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118255896 (CNOT6L)
Enzymes [BR:
cata01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118255896 (CNOT6L)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118255896 (CNOT6L)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118255896 (CNOT6L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
118255896
NCBI-ProteinID:
XP_035418416
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All DBs
Position
4:complement(16179578..16211647)
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AA seq
549 aa
AA seq
DB search
MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLND
NNLTRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILSLYQDPDGTRKLLNYMLDNLAVHPEQLPPRPWITLKERDQILP
SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQ
YFTLFLPALKERGYDGFFSPKSRAKIMSEQEKKHVDGCAIFFKTEKFTLVQKHTVEFNQV
AMANSEGSEAMLNRVMTKDNIGVAVVLEVHKELFGASIKSLHVDKQLLIVANAHMHWDPE
YSDVKLIQTMMFVSELKNILEKASSRPGSPTADPNSVPLVLCADLNSLPDSGVVEYLSNG
IVADNHKDFKELRYNECLMNFSGNGKNGASEGRITHGFQLKSAYENNLMPYTNYTFDFKG
VIDYIFYSNTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHPPLLPLV
NGVHLPNRR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctcccgatcctcgcaggatttacaccatcatgtcagca
gaagaggtagccaatgggaagaagtctcactgggccgaattagagatctcgggtagagtg
cggagcttaagtacgtcgctttggtcactgacgcacttgactgctctacacctcaatgac
aacaatctgactcgcattccacctgatattgccaagcttcataatctggtttacctggat
ctgtcatccaacaaactcagaagtttaccagcagaactaggaaacatggtatctctcagg
gaattgcttttaaataacaatctgttacgggttttgccttatgaacttggacggctcttc
cagctacaaaccctaggtttgaaaggcaatcctttatcacaagatattctcagcctctac
caggatccagacggaactcgaaagctactgaactacatgcttgacaatctagcagttcat
ccagagcagctgcctccaaggccatggattactttaaaagaacgagaccaaattctgccc
tcagcttcattcacagttatgtgctacaatgtgttgtgtgataaatatgccactcggcag
ctctatggctactgcccatcttgggcgctgaactgggagtatagaaaaaagggaatcatg
gaagaaatcgtcaactgtgatgcagatatcattagtcttcaggaagtggaaacagagcaa
tacttcaccctttttctgccagcattgaaagaacgaggatatgatggattcttttctcca
aagtcacgtgccaaaatcatgtctgagcaggagaaaaagcatgtggatggctgtgcaata
ttcttcaaaactgagaagtttacgctggtgcagaagcacaccgtggagttcaaccaggtg
gcaatggccaactcagaaggttcagaagcgatgttaaacagagtgatgacgaaggacaac
atcggagttgctgtggtgttagaggtgcacaaggaattatttggagcaagtataaaatct
cttcatgtggacaaacagctgcttattgtggccaatgcccacatgcactgggaccctgaa
tactcggatgtgaaactcattcagactatgatgtttgtctcagaactgaaaaatatcctt
gagaaagcctcaagcaggcctggtagcccaacagcagatcctaattctgtcccactggtg
ctgtgtgcagatcttaactcattgcctgattcaggtgtagtggaatacttaagcaatggc
atagtagctgacaaccacaaggacttcaaagagttgcgttacaacgagtgtctcatgaac
ttcagcggcaatgggaaaaacggggcttctgaaggaagaattacacatggcttccaactc
aagagcgcctatgaaaacaacttgatgccttacaccaattacacttttgatttcaaaggt
gtgattgactacattttctattccaacactcacatgaacgtgcttggtgtcctggggcct
ttggaccctcagtggctggttgagaacaacatcactgggtgtccacaccctcacatccct
tcagaccacttctcactgttaacacaactcgaactccatcctccgctcctgcctcttgtc
aacggtgtgcacttgccgaacaggaggtag
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