Cygnus atratus (black swan): 118255943
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Entry
118255943 CDS
T09349
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cata03041
]
118255943 (DDX1)
03016 Transfer RNA biogenesis [BR:
cata03016
]
118255943 (DDX1)
Enzymes [BR:
cata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118255943 (DDX1)
Spliceosome [BR:
cata03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118255943 (DDX1)
Transfer RNA biogenesis [BR:
cata03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118255943 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
118255943
NCBI-ProteinID:
XP_035418468
LinkDB
All DBs
Position
3:complement(13287861..13307383)
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDIDKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYIGLCKAPDGSVVKSQHAGNAQVVQTQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQIEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttttcggaaatgggtgttatgcctgagatagctcaagcagtggaggagatg
gattggcttcttcctacagatattcaagccgaatctataccattgatcctgggaggtggt
gatgtgcttatggctgcagaaacaggcagtggaaaaactggtgcttttagcattccagtt
atccagattgtttatgaaacactgaaggaccagatggaagggaagaaagggaaagcaact
attaaaactggcggagcagtgctcaataaatggcagatgaacccatatgatagaggatca
gcgtttgcaattggatcagatggtctgtgttgtcaaagcagagaagtaaaagaatggcat
ggatgcagagcaactagaggcgtgactaaaggaaaatactactatgaagtgtcttgtcat
gatcaaggcttgtgcagagttggttggtcaactatgcaggcatcgctagatttgggcact
gataaatttggctttggatttggtggcactggtaagaaatctcacaacaagcagtttgac
agctatggtgaggaattcactatgcatgatacaattggatgttatctagatatagataaa
ggacaaataaaattttccaaaaatgggaaagaccttggccttgcgtttgaaatcccacca
cacataaggaaccaggcactctttgcagcttgtgtactgaagaatgctgagttaaagttc
aattttggtgaagaagacttcaagtttccaccaaaagatggctatattggtctctgcaag
gctcccgatggtagtgttgttaaatcacaacatgcaggaaatgcacaagtggttcaaaca
cagaaccttccaaatgctccaaaagcgttgattgttgaaccatcgagagagctagcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgttgataatcccaaattaagggaa
ctgctgattattggtggggttgctgcaagagatcaactctctgtgctggaacaaggagtg
gatattgtcgttggaactcctggaagactggatgacctggtctcaacaggaaaacttaac
ttatctcaagttagattcctcgttctggatgaagctgatggccttcttctccaaggttat
tcagacttcataaacaggatccatagtcaaattcctcagataacttcggatggaaagcga
cttcaggtgatcgtgtgttctgcaacactgcattcttttgatgtgaaaaagctgtctgaa
aagatcatgcattttcccacctgggttgatctaaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcctgttaatccaaaagctgataaactctgggaaagacttggc
aagaatcatatcagaactgatgaagtacatgcaaaagataacacacgtcctggtgctaac
actccagaaatgtggtctgaagctatcaaaattctaaaaggagagtacactgttcgggca
atcaaagaacacaagatggaccaagccattattttctgcaggacaaaaatagattgtgat
aatatggagcaatacttcatccaacagggcggaggccctgataggaagggacatcagttc
tcttgtgtgtgtctgcatggtgacagaaaacctcaagaaagaaaacagaacctggaaaga
tttaagaggggagatgtccgtttcttgatctgcacagacgttgcagctagaggaattgat
attcatggtgttccgtatgttatcaatgtcacactgcctgatgaaaaacagaactatgtt
caccgaattgggagagtaggcagagctgaaaggatgggtctggcaatctcccttgtggca
aaagaaaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaaggatgctacaat
actagactgaaggaagaaggaggttgtactatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttaaactgcactattgcccaaattgaaccagacataaaagtgcca
gtagatgactttgacgggaaagttacatatgggcagaaaagagcccttggtggtggactc
tataaaggccatgtggatattctggcacctacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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