Cygnus atratus (black swan): 118256063
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Entry
118256063 CDS
T09349
Symbol
POLB
Name
(RefSeq) DNA polymerase beta isoform X2
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118256063 (POLB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cata03400
]
118256063 (POLB)
Enzymes [BR:
cata01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
118256063 (POLB)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
118256063 (POLB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
118256063 (POLB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
HHH_8
DNA_pol_B_thumb
HHH_5
HHH_3
NTP_transf_2
HHH_2
Cdd1
DUF3900
DUF6932
Motif
Other DBs
NCBI-GeneID:
118256063
NCBI-ProteinID:
XP_035418640
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All DBs
Position
27:2940..14423
Genome browser
AA seq
335 aa
AA seq
DB search
MSKRKAPAGSPNQGITDLLTELANYERNVNRAIHKYNAYRKAASVIARYPSEIRSGAEAK
KLDGVGAKIAEKIDEFLSTGKLRKLEKIRQDDTSASINLLTRVTGIGPAAARKFVEEGIK
TLEDLRKNEHKLTHHQRIGLKYFEDFEKRIPREEMLQMQEIVLKEVKNLDPKYIATVCGS
FRRGAESSGDMDVLLTHPTFTSEASKQSKLLHRVVEQLEKVHFVTDVLSKGDTKFMGVCQ
LPNKEDGTAYPHRRIDIRFIPKDQYYCGVLYFTGSDIFNKNMRTHALEMGFTINEYTIRP
LGVTGVAGEALPVECEKDIFDYIQWKYREPKDRSE
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcggaaggccccggcggggagccccaaccagggcatcacggacctcctgacg
gagctggcgaattacgagcggaacgtgaaccgggccatccacaagtacaacgcgtacagg
aaggcagcctccgttatcgcccggtaccccagcgagatacggagcggggctgaagccaag
aagctggatggagttggtgctaaaatagcagagaaaattgatgagtttttatccactgga
aaactacgcaaattggaaaagattcgacaagatgatacgagtgcatctatcaacctcctg
acacgagttactggcattggtccagctgctgccaggaagtttgttgaggaaggaattaaa
actttagaggatctaagaaaaaatgagcacaagctgacccatcaccagcgaattgggttg
aaatattttgaagactttgaaaaaagaatcccaagggaagaaatgctgcaaatgcaggaa
attgtgctgaaagaggtaaagaaccttgacccaaagtatattgctacagtctgtggcagt
tttagacgaggtgcagagtcgagtggtgatatggatgttctcttaacccatccaactttc
acatctgaagcatccaaacagtcaaaacttctgcatcgagttgtagaacagctggagaaa
gtccactttgtcacagacgtgctgtctaaaggtgacaccaaattcatgggtgtctgtcag
ctgccaaataaagaagatggaacagcgtatccacataggagaattgatatcaggttcatc
cctaaagatcaatattactgtggcgtactgtatttcacaggcagtgatatattcaataag
aacatgagaactcatgctctggaaatgggcttcacaatcaatgagtatacaatccgtccc
ttgggcgtcactggagttgctggggaggccctaccagtagaatgcgagaaagacattttt
gactacatccagtggaaatacagagagccaaaggatcggagtgaataa
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