Cygnus atratus (black swan): 118256527
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Entry
118256527 CDS
T09349
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118256527 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cata03400
]
118256527 (MSH2)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118256527 (MSH2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
118256527
NCBI-ProteinID:
XP_035419502
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Position
3:104171267..104206539
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AA seq
936 aa
AA seq
DB search
MAVEAPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTAHGADARLAARELF
RTRAVIRQLAGAAGNQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSMAIGVVGVKLSTADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVVQRGGILITDRKKAEFTTKDI
VQDLNRLLKSKKEEQLNSAALPEMEKQVAISSLSAIIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTTQSLSGLLNKCRTPQGQRLVNQWIKQPLMDKNRIE
ERLNLVEAFVVDPELRQGLQEDLLRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNV
VKALEKHEGTHQMLLLAVFITPLNDIHSDFSKFLEMIETTLDMDKVENHEFLVKASFDPN
LTELREKMNELEENMQSFLQSAAKELGLEAGKSIKLESNAQFGHHFRITCKEEKVLRNNS
KYKITDTQKNGVKFTNSKLSAVNEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAHLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAF
CMFATHFHELTALADQVATVNNLHVTALTSDDTLTMLYRVKAGVCDQSFGIHVAELAAFP
KHVIESAREKALQLEEFQNIGKSKESEGEPPSKKFYREREEGEKIIQYFLSQVKALPLTD
MSEEDIKIKLKQLRTDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaggcgccgcgggaggcggtgtggccggagggcgcgggcgccgaggcgggc
ttcgtgcgtgccgtgctgtcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggcgcacggcgcggacgcgcggctggccgccagagagctcttc
cgcacccgcgccgtcatccggcagctggcgggcgccgcgggaaatcagaaacttgaaagt
gttgtgcttagtaaaatgaactttgaatcatttgtaagagatctgctcctggttcgtcat
tacagagttgaagtttacaagaataaagcagggagtaaatctgtcaaagaaaatgactgg
tatctagcatacaagggttctccgggaaatcttgcccagtttgaagaagttctctttgcc
aacaatgatatgtcaatggcaattggggttgtgggggtgaagctgtctactgctgatgga
caaagagttgtaggagtagggtatgttgacactacgctgagaaaattgagcgtctgtgaa
tttccagataatgatcagttctcaaaccttgaagctctactggttcagctgggacctaag
gagtgtgtgctgccaggaggagagactgcaggagagatgggaaaactgcgacaagtcgtt
cagagaggaggaatcctgattacagacagaaagaaggcggaattcacaacaaaagatatt
gttcaggatctcaatcgcttgctaaaatcaaaaaaagaagaacaacttaatagtgcagca
ttgccagagatggagaagcaggtcgctatttcatctttgtcagccattatcaagttttta
gagttgctgtcggatgagtctaattttggacaatttgaactgactacttttgatcttagt
caatacatggttctagataatgcggctgtccaagccctcaacctgttccagagttctgtt
gaaaatgctaatactacacagtccttatctggtttactaaataaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacagcctcttatggacaagaatagaattgaa
gaaaggttgaatttggttgaagcctttgtggtagatccagaactacgtcagggccttcaa
gaagatcttttacgtcgctttccagatcttaaccgtctggcaaagaaatttcagagacaa
gctgcaaccttacaggactgttatcgaatgtatcaggctattaatcaactgcctaatgtt
gtaaaagcactagaaaaacacgaaggaactcaccagatgttgttgttagcagtgtttata
acacctcttaatgatattcactctgacttctcaaagtttttggagatgatagaaacaaca
ttggatatggataaggtggagaatcatgaatttcttgtcaaggcttcttttgatcctaac
ttgacagaattaagagagaagatgaatgaactggaagaaaacatgcagtccttcttacag
agtgcagccaaagaattaggtttggaagctggcaaaagtattaaactggagtcaaatgca
cagtttggacatcactttcgaattacttgcaaggaggaaaaagtcctccggaacaattca
aaatacaagataactgatacacagaagaatggtgtgaaatttactaacagcaaactgagt
gccgtcaatgaagaatatataaagaacagagaagaatatgaagaggctcaggacgcaatt
gttaaggaaatcattaatattgcttcaggttatgcagagccaatacagactatgaatgat
gtaatagctcatttagatgcaattgtcagttttgctcatgtgtcaaatggagcaccagtg
ccctatgtccgtcctgtcattttggaaaagggacaaggaaggattgtgctgaaaggtgcc
aggcatccttgcattgaagtgcaagatgaagtggccttcatccccaatgacattacattt
gagaagggcaagcagatgttccacattattactggccctaacatgggaggaaaatcaaca
tacatccgacagacaggggtgattgttcttatggcccaaattgggtgttttgtaccctgt
gactctgcggaaataaccattgtggattgtatcctggctcgggtaggagctggagacagt
cagctgaaaggcgtgtctactttcatggctgaaatgttggaaactgcttcaatccttagg
acagcatctgaaaactccctaataatcattgatgagctgggaagaggaacttctacctat
gatggctttggcttagcctgggctatttcagaatacattgctagcaaaatctgtgctttc
tgtatgtttgctacgcattttcatgaactgacagcacttgctgatcaagtggcaacagta
aataacctacatgttactgctctaaccagtgatgacacactgacaatgctttaccgtgtc
aaggcaggtgtttgtgaccagagttttggaatacatgtagcagagttggcggctttccca
aaacatgtgatagaaagtgcaagagagaaagcactgcaactggaggagtttcaaaacatt
ggcaagtccaaggaatctgaaggagaaccaccatccaagaaattctacagagaaagagag
gaaggtgaaaagatcattcagtattttcttagtcaagtgaaagcattgcccctgacagat
atgtcagaagaagacatcaaaatcaagctgaagcagctgagaactgatgtgttggcaaag
aacaacagttttgtgaacgaaatcatttcccgaacaaaagttacatcataa
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