Cygnus atratus (black swan): 118256794
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Entry
118256794 CDS
T09349
Symbol
NPC1
Name
(RefSeq) NPC intracellular cholesterol transporter 1 isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
cata04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
118256794 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
118256794 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cata02000
]
118256794 (NPC1)
Transporters [BR:
cata02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
118256794 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
118256794
NCBI-ProteinID:
XP_035419964
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All DBs
Position
2:complement(111307780..111336701)
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AA seq
1358 aa
AA seq
DB search
MPGTAPRPPPLLLGSRRRGREHSPAWGGRPFRTCAAAASSSLLSPPPAAVSLLPLPRCCC
CAAGPRSLPRTAMGSPQGCPGRGLLLFLLLLLLLLSPAQVLPQSCVWYGECGIASGDKRY
NCAYDGPPIALPKDGYDLLQELCPGLYFGNVSTCCDVLQLQTLKNNLQLPLQFLSRCPSC
FYNLINLFCELTCSPNQSEFLNVTSTIPYYDPVSKENKSSITELQYFIGEGFANAMYNAC
KDVEAPSSNVKALGLLCGKEVKDCNATNWIEYMFSKDNGQTPFSIIPIFSDVPVHGMNPM
NNATKGCNESVDDSTGPCSCQDCSIVCGPKPQPPPLPAPWLLFGLDAMYVIMWITYMGFL
LIFFALVFGIWCYRRRHFVSEYTPIDSNIAFSVNSHRDNGKITCGERLGERFENGLRMTF
TSWGAFCVRNPRPVILFSVVFIAMCCSGFVYIKATTNPVDLWSAPSSQARKEKEYFDKHF
GPFFRTEQLIIQAPNSHPDIFSPYPSGANVPFGPPLTKEILHQVLDLQDAIVNITASFDN
ETVTLKDICLAPLAPYNNNCTILSVLNYFQNSHSVLDHSVGDEFFVYADYHTHFLYCVRA
PASLNDTSMLHDPCLGTFGGPVFPWLVLGGYDGDNYNNATALVITLPVNNYYNDSRKLMK
ALAWEKEFINFLRNYHNPNLTISFSAERSIEDEINRESNSDIGTVLISYIVMFVYISIAL
GHIQSWRRLLVDSKISLGIAGILIVLSSVACSIGIFSYFGIPLTLIVIEVIPFLVLAIGV
DNIFIIVQTLQRDERLEGETLDKQIGRVLGDVAPSMFLSSFSETVAFFLGTLSTMPAVRT
FSLFAGMAVLIDFILQVTCFVSLLGLDIRRQERNRLDILCCIKGSEETSGVQRSESILFL
FFKNLYSPYLLKDWMRPIVIALFVGVLSFSTAVMHNVEIGLDQSLSMPDDSYVMDYFSQL
SKYLHAGPPVYFVLEEGHNYTSLEGQNMVCGGMGCNNDSLVQQIFNAAEISSYTRIGYAP
SSWIDDYFDWVKPQSSCCRVYNTTGQFCNASVTDPSCIRCRPLTQEGKQRPQGQDFMTFL
PMFLSDNPNPKCGKGGHAAYSSAVNFINNKTDVGATYFSTYHTVLKTSSDFIDAMKKARI
IADNITETMGIKEKNYRVFPYSVFYVFYEQYLTIVDDAIFNLCISLGSIFLVTTVLLGFE
VWAAVVVSVTIAMIIVNMFGVMWLWGISLNAVSLVNLVMSCGIAVEFCSHVTRAFTISTK
GSRVERAEEALSHMGSSVFSGITLTKFGGIVVLAFSKSQIFKIFYFRMYLAMVLLGATHG
LIFLPVLLSYIGPSVNKAKTHAAQERSRGTERERLLYF
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcacggcccctcggcccccgccgctcctcctcgggtcccggcggcggggccgt
gagcacagcccggcctggggagggcggcccttccggacctgcgcggctgccgcttcttct
tccctcctctctcctccccccgctgccgtctctctcttgccgcttccccgctgctgctgc
tgcgccgccggcccccgctcccttccccgcaccgccatggggagcccgcaaggctgcccc
gggcgggggctgctcctcttcctcctcctcctcctgctgctgctgtcccccgcacaggta
cttccacaatcgtgtgtctggtatggagaatgtggaattgcatccggagacaagagatac
aactgtgcttacgacggaccaccgatagcactaccaaaggatggctatgacttactgcag
gaactctgtccgggtttatattttggcaatgttagtacctgctgcgatgtccttcagctt
cagactttgaaaaacaacttgcagctgcctctacagtttctttcccggtgtccctcatgt
ttctacaacttgattaacctcttctgtgaactgacttgcagtccaaatcagtctgagttt
ttgaatgttacaagcaccataccttattatgatccagtttcaaaagagaacaaaagcagc
attacagagctgcagtacttcattggagaaggctttgcaaatgcaatgtataatgcctgc
aaagatgttgaggctccatcaagtaatgttaaagccttggggctactgtgtggtaaggaa
gtcaaggactgcaatgctaccaactggattgagtacatgtttagcaaggacaatgggcaa
actcctttcagcattattcctatcttttcagatgttcctgtccatggaatgaatcctatg
aacaatgctaccaaaggctgtaatgagtctgtggatgattcaacaggaccatgcagctgt
caagactgttcaattgtttgtggtccaaaacctcaaccccctccattacctgctccttgg
cttttgtttggtttggatgctatgtatgtcatcatgtggatcacctacatgggatttcta
cttatattttttgcgcttgtttttggtatctggtgttacaggaggcggcactttgtctca
gagtacacaccaattgacagcaatatagccttttccgtgaactctcaccgtgataatggg
aaaattacctgtggtgagaggcttggcgaaaggtttgagaatggcctgaggatgacattt
acatcatggggtgctttctgtgtcagaaatccacgtcccgttattctcttctctgtggtc
ttcattgctatgtgctgttcaggctttgtgtatattaaagcaactacaaaccctgtagat
ctctggtcagctccaagcagccaagcccgcaaagagaaggagtactttgacaaacacttt
gggcctttctttcgtactgaacaactcattattcaagcgccaaacagccatccagacatc
ttttcaccttacccatcaggagcaaatgtgccttttggacctccactcaccaaagaaatt
ctccatcaggttctagatttgcaggatgctattgtaaacataactgcatcttttgacaat
gagactgtaacgctgaaagacatttgcctggctcctcttgctccctacaacaacaactgc
actatactgagtgtactcaactactttcagaacagtcattctgtcctagatcatagtgtt
ggggatgagttctttgtttatgctgactaccacactcacttcttatactgtgttagggct
ccagcatcactgaatgacacaagcatgcttcacgatccctgcctaggaacatttggtgga
cctgtctttccgtggctggtgttgggaggatatgatggtgataactataataatgctaca
gctcttgttattactcttcctgttaacaactactacaatgactccagaaagctaatgaaa
gccttggcatgggaaaaagagtttattaacttcttgaggaactatcataatccaaacttg
actatatcgttctctgctgaacggagtattgaagatgaaatcaatcgtgaaagcaatagt
gatatcggcactgttttgataagctatattgtaatgtttgtgtacatctccatagctttg
ggacatatccagagctggagaagactgctggtggattccaagatctccctgggtattgca
ggcatcctgattgtactgagctcagtggcgtgttctataggcattttcagttactttgga
atcccgctgacactgattgtgatagaagtcattcccttcttggtgctggctattggggtg
gacaacatttttattatagtgcagacacttcagagagatgaacgccttgagggtgaaact
ctggataaacagattggcagagtcttgggagatgtggcacctagtatgtttctgtcatct
ttttctgagactgtagcattcttcttagggacactgtctaccatgccagcagtccgcacg
ttctccctttttgctggaatggctgtactcatagattttattcttcaagtcacctgcttt
gtaagtctcctgggcttggatattaggcgtcaagagaggaatagactggatattctgtgt
tgtatcaaaggcagtgaagaaacaagtggggtgcaacgttctgagagcatcttatttttg
ttcttcaaaaacctgtattctccatatctgcttaaggactggatgagaccgatagtgatt
gccttgtttgtgggcgttctgtcattcagtacagcagttatgcacaatgtagagattgga
cttgatcagtctctttcaatgccagatgactcctatgtaatggattacttcagccagctc
agcaagtacctgcatgcgggtcctcctgtttactttgttcttgaagaagggcacaactac
acctctctggaagggcagaacatggtgtgtggtggaatgggatgtaataatgattcactt
gtccagcaaatcttcaatgctgcagaaatcagtagctatacaaggataggctatgctcca
tcatcctggattgatgactactttgactgggtgaagccacagtcatcctgttgcagagtc
tacaataccaccggacagttctgcaatgcttcagtcactgatccatcctgtattcgttgt
cgaccactgactcaagaaggcaagcagagaccacaaggccaagacttcatgacatttttg
ccaatgtttctctctgacaaccctaatcctaaatgtggcaaaggaggacatgctgcatat
agttctgctgtcaactttataaacaacaaaactgatgttggagcaacttattttagtact
taccatactgtactgaaaacatcatctgattttattgacgccatgaaaaaagctcgaatt
atagcagacaacattactgaaaccatgggcatcaaagagaagaactatcgcgtgtttcct
tacagtgtattttatgtcttctatgaacagtatctgacaattgtggatgatgctatcttt
aacctctgcatctccttgggatcaatatttttggtgacaactgtgctgcttggatttgaa
gtatgggctgctgttgtggtttcagtaactattgctatgataatcgtcaacatgtttgga
gtgatgtggctctggggcatcagcttgaatgcagtttcactagtaaatcttgttatgagc
tgtggtattgctgtggaattttgcagtcacgtcacaagagcattcactattagtactaag
ggcagtagagtagagcgtgcagaagaagctctgtctcacatgggcagttcagtcttcagt
ggaatcacactgactaaatttggaggaattgtagtactggctttttccaaatctcaaatc
ttcaagatattctacttcaggatgtatctagctatggttcttctgggagcaacacatgga
ctaatatttcttccagttctgcttagttacataggcccatcggtaaataaagctaaaact
cacgctgcacaggagaggtccagaggtacagaacgagagagactcctctacttctag
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