Cygnus atratus (black swan): 118256852
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Entry
118256852 CDS
T09349
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118256852 (CHD1)
03036 Chromosome and associated proteins [BR:
cata03036
]
118256852 (CHD1)
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
118256852 (CHD1)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
118256852 (CHD1)
SLIK complex
118256852 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DUF7855_C
Motif
Other DBs
NCBI-GeneID:
118256852
NCBI-ProteinID:
XP_035420086
LinkDB
All DBs
Position
Z:complement(56115784..56170377)
Genome browser
AA seq
1810 aa
AA seq
DB search
MNGHSDEESVRNSSGESSRSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDTSREKKQVQAKPPKVDGTEFWKSSPSILAVQRSAVLKKQQQQQKAVSSDSVSE
EESSSSEDSADDSSSETKKKKHKDEDWQMSESGSVSGTGSDSESEEDRDNSSCDESESDY
EPKNKVKSRKPPSRIKPKSGKKSAGQKKRQLDSSEEEEDDDEEDYDKRGSRRQATVNISY
KEAEETKTDSDDLLEVCGEDVPQTEEDEFETIEKFMDSRIGRKGATGAATTIYAVEADGD
PNAGFEKSKESGEIQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRW
LKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECS
WEDGALIAKKFQTRIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGQESLELR
DYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSF
LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ
KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQH
LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVA
NFSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQISF
NGSEGRRSRSRRYSGSDSDSITERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSCGQERAGGRLGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLL
VGIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEA
QRLAGAGNSKRRKTRTKKNKLIKASKIKEEIKSDSSPQPSEKSDEDDDEEDNKDEIVSVK
HLHKKIKAEKENEEKPEPDIGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKDIK
EKRENKVKESTQKEKEVKEEKVNEIKSENKEKTKKIPLLDTPVHITATSEPVPISEESEE
LDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNP
EQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSNVNTHVIRNPD
VERLKETTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKSDSRKRPYSAFSNGKDHR
DWDHYKQDSRYYSDSKHRKLDDHRSRDHRSNLEGNLKDSRPHSDHRSHSDHRIHSDHRSA
SEYSHHKSSRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKST
PEHTWSSRKT
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaagaaagtgtaagaaacagcagtggagagtcaagtcgatca
gatgatgattctgggtcagcatcaggttctggatctggttcaagctctggaagcagtagc
gatggaagtagcagccagtcagggagcagtgactctgactctggttcagagtcaggcagt
caatcagaatcggagtccgacacatctagagagaagaaacaagtacaagctaaaccacca
aaagttgatggaactgagttttggaagtccagtccaagtatacttgctgtacagagatca
gcagtgctcaagaagcaacaacaacaacaaaaggcagtatcatcagacagtgtttctgaa
gaggagtcatccagtagtgaagattctgccgatgactcatccagtgaaaccaagaagaaa
aaacataaagacgaagactggcaaatgtcagagtcaggatcagtatcaggaactggttct
gattctgaatcagaggaagacagggataatagcagttgtgacgaaagtgaatcagactat
gagccaaaaaacaaggtcaaaagccggaaacctccaagcagaattaagccaaaaagtggg
aaaaagagtgcaggacagaaaaagaggcaacttgattcatctgaggaggaggaggatgat
gatgaggaggattatgataagagaggatctcgtcgccaggcaacagtcaacattagttac
aaagaagctgaggaaaccaagacagattctgatgatttgctggaagtttgtggagaagat
gtcccgcaaactgaagaagatgaatttgaaactatagaaaagtttatggatagtcgaatt
ggccgaaaaggagccactggtgccgcaaccaccatctatgcagttgaggcagatggcgac
ccaaatgctgggttcgaaaagtcaaaggagtcaggagaaatacagtatcttattaaatgg
aaaggctggtcacacatccataacacttgggaaactgaggaaacactgaaacaacaaaat
gttaaaggaatgaagaaactggacaactacaagaaaaaagatcaggaaacgaaacgatgg
ctgaaaaatgcttctccagaagacgtggaatattataactgccagcaggagcttacagat
gatctacataaacagtatcagatagtggaaagaataattgctcattcaaatcaaaagtca
gcagctggttatccagactactattgcaaatggcagggtctaccttattcagaatgtagc
tgggaagatggtgctctcattgccaaaaagtttcagacacgcattgatgagtattttagc
agaaatcaatccaaaaccactccttttaaggactgcaaggttctaaaacagagaccaaga
tttgttgcactaaagaagcagccatcttacattggaggacaggaaagtttggagttaaga
gattatcagttaaatggattgaattggcttgctcattcgtggtgcaaagggaatagttgt
attcttgcagatgaaatgggtctgggtaaaacaatacaaacaatttcttttctgaactac
ctgtttcatgaacatcaactgtatgggcctttcctgctggttgtgccactttctactttg
acatcttggcaaagagagattcaaacttgggctcctcagatgaatgctgtagtttactta
ggagatataaccagcagaaatatgataagaactcatgaatggatgcatccacagaccaaa
cgactaaagtttaacatacttctgacaacatatgaaattttgctgaaggataagtcattc
cttggcggtctaaattgggcgttcataggggttgacgaagctcatcgtttaaaaaatgat
gactctcttctgtacaagactttaatagactttaagtctaaccatcgacttcttattact
ggaactcctctgcaaaactccctcaaagaactttggtctttgttgcacttcatcatgcca
gaaaaattttcctcctgggaagattttgaagaggagcatggcaaaggaagagagtatggt
tatgcaagtcttcacaaagagcttgaaccgtttttgctgagaagagttaaaaaagatgta
gaaaagtctttacctgcaaaagttgagcaaattctgaggatggaaatgagtgcactgcag
aaacaatattacaagtggattttaacaaggaattataaagccctcagtaaaggttcaaaa
ggcagtacgtctggctttctgaacattatgatggaactcaaaaagtgttgtaaccattgc
tacctcattaagccaccagatgataatgaattctataataaacaggaggccttacagcat
ttaatacgtagcagcgggaaactaatccttcttgacaagctactgattcgtctgagagaa
cgtggcaacagagttctgattttctctcagatggtgaggatgctggacatcctagcagag
tacctaaagtatcgtcagtttcccttccagagacttgatggatcaataaaaggggaattg
aggaaacaagcactggatcattttaatgcagaaggatcagaggacttttgctttttactg
tctaccagagctggaggattaggtataaacttggcgtctgctgacactgtagttatattt
gattctgactggaatccacagaatgatctgcaagcacaagctagagctcataggattgga
cagaagaaacaggttaatatttatcgtctagtcacaaaaggatcagtagaagaagatatt
cttgaaagagccaagaagaagatggtgttagatcatctagtaattcagagaatggacact
acaggaaaaactgtactacatacaggttctactccttcaagctcaacaccttttaataaa
gaagaattgtcagcaattttaaaatttggtgcagaggaactttttaaagaacctgaaggg
gaagaacaggagccccaggaaatggatatagatgaaatcttgaagagggctgaaactagg
gaaaatgagccaggtccattaactgtaggagatgagttgctttcacagttcaaggtggcc
aacttttccaatatggatgaagacgatattgagttggaaccagaaagaaactcaagaaac
tgggaagaaatcatcccagaagtccagaggcgaagaatagaagaggaggaaagacaaaaa
gaacttgaagaaatatatatgctcccaaggatgagaaactgtgcaaaacagatcagcttt
aatggaagtgaaggaagacgcagtaggagcagaagatattctggatctgatagtgactcc
atcacggaaagaaaacgtccaaaaaagcgtggaagaccacgaactattcctcgagaaaat
attaaaggatttagtgatgcggagatcaggcggtttatcaagagttacaagaaatttggt
ggccctcttgaaaggttagatgctgtagctagggatgctgagctagttgataaatctgaa
acagaccttagacgtttgggagagcttgtgcataatggatgcattaaggctttaaaggac
aattcatgtggacaagaaagagcaggaggtagacttgggaaagttaaaggcccaacattt
cgaatctcaggagtgcaggtgaatgcaaagctagtcatctctcatgaagaagagttggca
ccattgcacaaatccattccttcggatccagaagaaaggaaaagatatgtaatcccatgc
cacaccaaggctgctcattttgatatagactggggtaaagaagatgattccaatctgtta
gtaggcatctatgaatatggctatggcagctgggaaatgataaaaatggatcctgatctc
agtttgacacagaagattttacctgatgatccagataagaaaccccaggcaaagcagtta
cagactcgtgcagactacctcataaaattactgaataaagaccttgcaagaaaggaagca
caaaggcttgctggtgcaggcaattcaaagaggaggaaaacaagaactaagaagaataag
ttgataaaggcttcaaaaataaaagaagaaataaaaagtgattcatcgccacagccctca
gaaaaatctgatgaagatgatgatgaggaggataacaaggatgagattgtttcagtgaaa
catctacataaaaaaataaaagcagaaaaagaaaatgaagaaaagcctgagccagatatt
ggtataaagaaggaagctgaagaaaaaagagagacaaaagaaaaggaaaataaaagggat
ttgaaaagggagaaaaaagaaaaagaggataagaaagaattaaaagaaaaagatattaaa
gaaaagagagaaaacaaagtaaaagaatccacacagaaagaaaaagaagtaaaggaagag
aaggtaaatgaaatcaaatcagaaaataaagaaaaaactaaaaaaattccattgttggat
actccagttcacattactgccacgagtgaaccagttcctatatcagaagaatccgaagaa
ctagatcagaagacgtttagtgtgtgcaaagaaagaatgaggcctgtcaaagcagcattg
aaacaactggatagaccagagaagggcctttctgaaagggagcagctggaacatactaga
cagtgtctaatcaaaattggggatcacattactgaatgcctaaaggagtacacaaatcca
gaacaaattaaacagtggaggaaaaacttgtggatttttgtctctaagtttacagaattt
gatgccagaaagttgcacaaactgtataagcatgcaatcaaaaagcgccaagagtctcag
caacacaatgaccagaatattagcagcaatgtgaatacccatgtaatcagaaatccagat
gtagaaagactgaaagagactacaaatcatgatgacagtagcagagacagttactcttct
gatagacatctgtcacaataccatgatcatcacaaagacaggcatcaaggagatgcttac
aagaaaagtgactctaggaaaaggccatattcagccttcagcaatggaaaagatcacaga
gactgggatcactacaaacaagacagcagatactacagtgatagtaaacatagaaagtta
gatgaccacaggagcagagaccacaggtcaaacctggaaggaaatttaaaagacagccgg
cctcattcagatcaccgttcccattcagatcacaggatacattcagatcaccgttctgct
tcagagtacagccatcataaatcttccagagattataggtaccactcagactggcaaatg
gaccacagagcttctggtagtggcccaaggtcaccactagatcagaggtctccttatggt
tcaagatctcccctgggacacaggtctccatttgaacactcatcagatcacaaaagtaca
cctgaacatacatggagtagccggaaaacataa
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integrated database retrieval system
