Cygnus atratus (black swan): 118257030
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Entry
118257030 CDS
T09349
Symbol
SHOC1
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cata03036
]
118257030 (SHOC1)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Meiosis-specific proteins
Others
118257030 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
118257030
NCBI-ProteinID:
XP_050572503
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Position
Z:complement(73751425..73808875)
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AA seq
1538 aa
AA seq
DB search
MGKNSLDDQTRKVVVNGSYSAWRQHHKTRKMFTALKYHSTDYLYESMARQKFSICRLSLC
FPPCLQQHEKSHLTGLFADDKYRKPWTRVTSTQNTIAISVLDQWKKSLSVEDFLEKKPII
SLEFHSNNELIEVIPSSNPFSQTDTEELYLLKENICTEESTQDKYLKVDCASELKEQWQD
LYVGDELIFVDNLENCHKKLPHSSALLDRLKFFLVRDPLLDSEGQNLREENIFRELLTFP
NEMEMQESKKELQAIKETFCTITLKDKEYFMLPVELEFCKNSNSRSDSIKTPSYLELKEL
LNVAPETMADEDMCEEVIKEDLKAEISNKIEVSKYCPIPGELCSSNSTSMLESCESATHV
SYLQDEMEIPLTPLCRQQRSQVNCMCVGLQEEPITLSGNSIFITESSREYLECLVWQSEK
YWDNVSSLLLVEHQTFKLAYQHHSLAELKKVLSIDIEAPMLISLEEDWWIHMGLSPACVD
TLEQLNMDSSNTNSLLPTEVETFTQFKSYQLERWLEEKNSMTNQELFSAKRHQLYQVTNG
TLPINAASSVKIDSSTAFVEEFDGRSVQKSKVEEKIYFLNQGKKTPKSLDSVSPKDVSFK
GDNSSEAQKPASFTPATKWDNDDSDLSNFIMLRSKHTVTQREEENDIDSPEKVLQPKEQH
LPDHKEDSSVCEPVTAEKEENESSSTVKIQASESQYQAYCLLEGAATPILKDLAHLGVLA
SVSWSFDSIKFDHTRFFLKQQEKVICDHFKEGKVDEKEITLFRHAALVHLLVTVRDLLLT
CGLDTALGYLSKAKDIYKNIVESCLDNIWRQLKVVQYSSQKKHEISPKITELQRQMLNWM
QSYREERSAKVLEGHNKVAXENFLFSRLKQHRISPPFLTGEVLQPSDCLRGPPLDPLKQT
HILLVLGAPELNVVLYILIITRMDSEREKAALIHTLSRVEGLKAIDLNYEKKGTFLGRKD
VVSNRYSCVIVQNQQIGADFPWTHFSLVIEYDYSENSCWKNRCENLNITYMTFKTTLPET
RQMGNHCGSFLLEVQIPYVFLTTEGLLNMPDFLQLLESNYSITFVERSCSHSLRLFGDTD
RYVVLTIDECTAIFLQNLDELNYEKSCDNVILKLTALSLQYTCCWVVFYSRERLSLEYSL
RGDTLLNLVIIYATLIELTQKSEDFEVKVFLTPGIEEAALLIRLIADNVLMASSISPLEW
LDKSWLSVLPSEMEKCLLTFPCINPLVAQFMLKKGSSLSRLFLASFVQLQELLPEVPKKV
LKHFSDMTSMYSLNAAGPLKTAVKGASPPENWKNINRLYPACKQNYQSLELLAKAQTSTG
PPHVNSEAIVPPPNCHQGLIDSDLSSYMQKKSCSSEVVTGRKQNSFVVPKDCEGFTHPGA
MNSLFVQRQPCRINCSSDHSSKKPEQEDFFATFIDCAPRKNSKGFLEEFREMTFKSPEIV
IDETPWNGFSSTCTYDSFAPNSFLSDSLADPDEPQSLHFHHLGRESSGKRKQSPPYLWTK
GKTLTDSGFEEVPGIKKRRLMYERVPGRSDGQTRLKFF
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaattccttggatgatcagactcggaaggtggtggttaatgggtcatattca
gcctggaggcagcatcacaaaacaagaaagatgttcacagctttaaagtatcactcaaca
gactatttatatgagagcatggcaaggcagaagttttccatctgtagattatcactttgc
tttcctccctgtttgcaacaacatgaaaagagtcatctgactggactctttgctgatgat
aagtataggaagccatggactagagttacatcaacacagaacacaattgctatttcagtg
ttggatcaatggaagaaaagtttatctgtggaggatttcctggaaaagaaacctatcatt
tctctggagttccatagtaataacgaattgatagaagttattccaagttcaaatcccttc
tctcagactgacacagaagaactttatttactcaaggagaatatctgtacggaagaatca
actcaagacaaatatttgaaggttgactgtgcctctgaacttaaagaacaatggcaagat
ttatatgttggagatgaacttatttttgttgataatcttgaaaactgtcataaaaaactt
ccacattcatctgcacttctggacagactaaaattttttttagtgagagatcctctttta
gattctgaaggacagaatttaagagaagagaacatttttagggaactcttgacttttcca
aatgaaatggagatgcaggagagtaaaaaagaattgcaggcaattaaagagaccttctgt
acaataactttaaaagataaagagtatttcatgttgcctgttgagttagaattctgcaaa
aacagcaacagcagatcagattccattaagactccatcgtatttggaactgaaagagctg
ttaaatgtagctccagaaactatggctgatgaagacatgtgtgaagaggtgatcaaagag
gatcttaaagcagaaatttcaaacaaaattgaagtttccaaatactgtcccataccagga
gagctttgctccagtaacagcacaagtatgttggaatcctgtgagtcagctacacatgtt
tcatatctgcaagatgaaatggaaatacctttaactcctctgtgcagacaacaaagatca
caggtgaactgtatgtgtgtaggacttcaagaagaacctattactctttctggtaacagc
atttttattacagagtcctctagggaatacttagaatgcctggtatggcaatcagagaaa
tactgggacaatgtgagctctcttttgcttgtcgagcatcagacctttaaacttgcatat
cagcatcattcgctcgcggaactgaagaaagtgctatcaattgatatagaagcaccgatg
cttatctcactagaggaggactggtggattcatatgggattaagtccagcctgtgttgat
acgttggagcaattaaatatggattccagtaatacaaacagtttacttcctacagaagta
gaaacattcacacaatttaaatcatatcaactagaaagatggcttgaagagaagaattcc
atgacgaatcaggagctgttttctgccaaaagacatcagttgtaccaagtaactaatggg
accctgcctataaatgctgcatcttctgtcaaaattgacagttcaactgcctttgtagaa
gagtttgatggaagaagcgtacaaaagagtaaggtagaagagaagatttatttcttaaac
caaggaaagaagacacccaaatcacttgattcagtcagccctaaagatgtgtcttttaaa
ggagacaactcttccgaggctcagaagcctgcatcattcacacctgctacaaaatgggac
aatgatgattctgatctgagcaactttatcatgctgagatctaaacacacagtcacccaa
agagaggaagagaatgacatagatagtcctgaaaaagtgctgcaacccaaagaacagcac
ttgcctgatcacaaagaggacagttctgtgtgtgagcctgtaacagcagagaaagaagag
aatgagagcagcagcacagtcaaaattcaagcatcagaaagccaataccaggcatactgt
ctgttggaaggagcagccacccctattttaaaagatttggcacatctaggtgttcttgct
tctgtaagttggagctttgacagcataaaatttgaccatacaaggtttttcttaaagcag
caggagaaagtgatatgtgatcattttaaagaaggtaaagtagatgagaaagagatcacg
ctgttcagacacgctgctctggtgcatctcttggtgacagttcgagaccttctgttaaca
tgtggcttggacacagcactaggatatttgtctaaagcaaaggatatctacaaaaacatc
gtagaatcctgtttggataatatctggaggcagctgaaggttgtacagtacagcagccag
aaaaagcatgaaatcagtcccaaaataacagaacttcagcgtcaaatgttaaattggatg
caaagttaccgagaggaacgcagtgctaaggtactggaaggccacaataaggtggcttaa
gagaactttctcttctccaggctgaaacaacatcggatctctccgcctttcttaacagga
gaggtgctccagccctctgattgtcttcgtggccctcctctggaccctctcaaacaaacc
cacatccttcttgtgctgggggccccagagctgaatgtggtactctatatactaatcata
acaagaatggactctgagagagaaaaagctgctctcattcacactttatctagagtagaa
ggtttaaaagctatcgatttgaattatgagaaaaaaggaaccttcctaggtcgtaaagat
gtcgtaagcaatagatactcctgtgttattgtacaaaatcagcaaattggagctgacttc
ccttggactcacttctcattggtgatagaatatgattattctgaaaattcttgctggaaa
aatcggtgtgaaaatctaaatattacttacatgacttttaaaaccaccctccctgaaaca
agacaaatgggaaatcactgtggttcctttcttctggaagtacagattccctatgtgttt
ctcacaactgaaggtcttcttaatatgcctgattttcttcagctgttggaatccaattac
agcattacctttgttgaaagaagctgcagtcactccttaaggctatttggagacacagat
cgatacgttgtgttgacaatagatgaatgcactgctatctttttgcagaatttggatgaa
ttaaattacgagaaatcctgtgacaatgtaatactgaagctgacggcgttatcactccaa
tatacatgctgctgggttgttttctattccagagaaagactgagtttagagtacagtctc
aggggagatactctgcttaacctggtaataatttatgccactctgattgaattaacacag
aagtcagaagactttgaagtgaaggtatttcttacgccagggattgaagaggcagcactg
ttaattcgtctgattgctgacaacgttttaatggcatctagtatcagtcctcttgagtgg
ttggacaaatcctggctttctgttttgccttctgagatggagaaatgcctgcttactttt
ccatgtatcaaccctctggttgctcagtttatgttaaagaagggatcttctttgagtagg
ctgtttcttgcaagttttgttcaacttcaggagctcctgccagaggttccaaaaaaagtt
ttaaagcattttagtgacatgacatctatgtacagcctaaatgctgctggtccactaaaa
acagcagtgaaaggtgcatcacccccagaaaactggaaaaacattaacagactctatcca
gcttgtaagcaaaattatcagtctttagagctgctggctaaggcacaaactagcacagga
ccacctcatgtgaattctgaagccatagttcctccaccgaactgtcatcagggtcttatt
gactctgacctttcaagctatatgcaaaagaaatcatgttcttcagaagtagttacaggg
agaaaacagaattcctttgttgtgccaaaggactgtgaaggttttactcatccaggtgct
atgaattctttatttgttcaaagacagccctgcaggattaactgcagctctgatcattcc
tcaaaaaaacctgaacaagaggatttctttgcaactttcattgactgtgcacctcgcaag
aactctaagggctttctagaagaatttagagaaatgacatttaagagcccagaaattgtg
attgacgagaccccgtggaatggcttttcatctacctgcacatatgattcatttgcacct
aattcttttctctctgattcccttgctgatccagatgagcctcaaagtctgcattttcat
cacctaggtagagaatcttcaggaaagagaaagcaaagtccaccatacttatggacaaaa
ggaaaaacattaacagattcaggatttgaagaagtaccagggatcaagaaaaggagattg
atgtatgaaagagtccctggaagaagtgatggacaaacacgtcttaaattcttttga
DBGET
integrated database retrieval system