KEGG   Cygnus atratus (black swan): 118257030
Entry
118257030         CDS       T09349                                 
Symbol
SHOC1
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
  KO
K28108  shortage in chiasmata 1
Organism
cata  Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:cata00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cata03036]
    118257030 (SHOC1)
Chromosome and associated proteins [BR:cata03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    118257030 (SHOC1)
SSDB
Motif
Pfam: DUF5587
Other DBs
NCBI-GeneID: 118257030
NCBI-ProteinID: XP_050572503
LinkDB
Position
Z:complement(73751425..73808875)
AA seq 1538 aa
MGKNSLDDQTRKVVVNGSYSAWRQHHKTRKMFTALKYHSTDYLYESMARQKFSICRLSLC
FPPCLQQHEKSHLTGLFADDKYRKPWTRVTSTQNTIAISVLDQWKKSLSVEDFLEKKPII
SLEFHSNNELIEVIPSSNPFSQTDTEELYLLKENICTEESTQDKYLKVDCASELKEQWQD
LYVGDELIFVDNLENCHKKLPHSSALLDRLKFFLVRDPLLDSEGQNLREENIFRELLTFP
NEMEMQESKKELQAIKETFCTITLKDKEYFMLPVELEFCKNSNSRSDSIKTPSYLELKEL
LNVAPETMADEDMCEEVIKEDLKAEISNKIEVSKYCPIPGELCSSNSTSMLESCESATHV
SYLQDEMEIPLTPLCRQQRSQVNCMCVGLQEEPITLSGNSIFITESSREYLECLVWQSEK
YWDNVSSLLLVEHQTFKLAYQHHSLAELKKVLSIDIEAPMLISLEEDWWIHMGLSPACVD
TLEQLNMDSSNTNSLLPTEVETFTQFKSYQLERWLEEKNSMTNQELFSAKRHQLYQVTNG
TLPINAASSVKIDSSTAFVEEFDGRSVQKSKVEEKIYFLNQGKKTPKSLDSVSPKDVSFK
GDNSSEAQKPASFTPATKWDNDDSDLSNFIMLRSKHTVTQREEENDIDSPEKVLQPKEQH
LPDHKEDSSVCEPVTAEKEENESSSTVKIQASESQYQAYCLLEGAATPILKDLAHLGVLA
SVSWSFDSIKFDHTRFFLKQQEKVICDHFKEGKVDEKEITLFRHAALVHLLVTVRDLLLT
CGLDTALGYLSKAKDIYKNIVESCLDNIWRQLKVVQYSSQKKHEISPKITELQRQMLNWM
QSYREERSAKVLEGHNKVAXENFLFSRLKQHRISPPFLTGEVLQPSDCLRGPPLDPLKQT
HILLVLGAPELNVVLYILIITRMDSEREKAALIHTLSRVEGLKAIDLNYEKKGTFLGRKD
VVSNRYSCVIVQNQQIGADFPWTHFSLVIEYDYSENSCWKNRCENLNITYMTFKTTLPET
RQMGNHCGSFLLEVQIPYVFLTTEGLLNMPDFLQLLESNYSITFVERSCSHSLRLFGDTD
RYVVLTIDECTAIFLQNLDELNYEKSCDNVILKLTALSLQYTCCWVVFYSRERLSLEYSL
RGDTLLNLVIIYATLIELTQKSEDFEVKVFLTPGIEEAALLIRLIADNVLMASSISPLEW
LDKSWLSVLPSEMEKCLLTFPCINPLVAQFMLKKGSSLSRLFLASFVQLQELLPEVPKKV
LKHFSDMTSMYSLNAAGPLKTAVKGASPPENWKNINRLYPACKQNYQSLELLAKAQTSTG
PPHVNSEAIVPPPNCHQGLIDSDLSSYMQKKSCSSEVVTGRKQNSFVVPKDCEGFTHPGA
MNSLFVQRQPCRINCSSDHSSKKPEQEDFFATFIDCAPRKNSKGFLEEFREMTFKSPEIV
IDETPWNGFSSTCTYDSFAPNSFLSDSLADPDEPQSLHFHHLGRESSGKRKQSPPYLWTK
GKTLTDSGFEEVPGIKKRRLMYERVPGRSDGQTRLKFF
NT seq 4617 nt   +upstreamnt  +downstreamnt
atgggtaaaaattccttggatgatcagactcggaaggtggtggttaatgggtcatattca
gcctggaggcagcatcacaaaacaagaaagatgttcacagctttaaagtatcactcaaca
gactatttatatgagagcatggcaaggcagaagttttccatctgtagattatcactttgc
tttcctccctgtttgcaacaacatgaaaagagtcatctgactggactctttgctgatgat
aagtataggaagccatggactagagttacatcaacacagaacacaattgctatttcagtg
ttggatcaatggaagaaaagtttatctgtggaggatttcctggaaaagaaacctatcatt
tctctggagttccatagtaataacgaattgatagaagttattccaagttcaaatcccttc
tctcagactgacacagaagaactttatttactcaaggagaatatctgtacggaagaatca
actcaagacaaatatttgaaggttgactgtgcctctgaacttaaagaacaatggcaagat
ttatatgttggagatgaacttatttttgttgataatcttgaaaactgtcataaaaaactt
ccacattcatctgcacttctggacagactaaaattttttttagtgagagatcctctttta
gattctgaaggacagaatttaagagaagagaacatttttagggaactcttgacttttcca
aatgaaatggagatgcaggagagtaaaaaagaattgcaggcaattaaagagaccttctgt
acaataactttaaaagataaagagtatttcatgttgcctgttgagttagaattctgcaaa
aacagcaacagcagatcagattccattaagactccatcgtatttggaactgaaagagctg
ttaaatgtagctccagaaactatggctgatgaagacatgtgtgaagaggtgatcaaagag
gatcttaaagcagaaatttcaaacaaaattgaagtttccaaatactgtcccataccagga
gagctttgctccagtaacagcacaagtatgttggaatcctgtgagtcagctacacatgtt
tcatatctgcaagatgaaatggaaatacctttaactcctctgtgcagacaacaaagatca
caggtgaactgtatgtgtgtaggacttcaagaagaacctattactctttctggtaacagc
atttttattacagagtcctctagggaatacttagaatgcctggtatggcaatcagagaaa
tactgggacaatgtgagctctcttttgcttgtcgagcatcagacctttaaacttgcatat
cagcatcattcgctcgcggaactgaagaaagtgctatcaattgatatagaagcaccgatg
cttatctcactagaggaggactggtggattcatatgggattaagtccagcctgtgttgat
acgttggagcaattaaatatggattccagtaatacaaacagtttacttcctacagaagta
gaaacattcacacaatttaaatcatatcaactagaaagatggcttgaagagaagaattcc
atgacgaatcaggagctgttttctgccaaaagacatcagttgtaccaagtaactaatggg
accctgcctataaatgctgcatcttctgtcaaaattgacagttcaactgcctttgtagaa
gagtttgatggaagaagcgtacaaaagagtaaggtagaagagaagatttatttcttaaac
caaggaaagaagacacccaaatcacttgattcagtcagccctaaagatgtgtcttttaaa
ggagacaactcttccgaggctcagaagcctgcatcattcacacctgctacaaaatgggac
aatgatgattctgatctgagcaactttatcatgctgagatctaaacacacagtcacccaa
agagaggaagagaatgacatagatagtcctgaaaaagtgctgcaacccaaagaacagcac
ttgcctgatcacaaagaggacagttctgtgtgtgagcctgtaacagcagagaaagaagag
aatgagagcagcagcacagtcaaaattcaagcatcagaaagccaataccaggcatactgt
ctgttggaaggagcagccacccctattttaaaagatttggcacatctaggtgttcttgct
tctgtaagttggagctttgacagcataaaatttgaccatacaaggtttttcttaaagcag
caggagaaagtgatatgtgatcattttaaagaaggtaaagtagatgagaaagagatcacg
ctgttcagacacgctgctctggtgcatctcttggtgacagttcgagaccttctgttaaca
tgtggcttggacacagcactaggatatttgtctaaagcaaaggatatctacaaaaacatc
gtagaatcctgtttggataatatctggaggcagctgaaggttgtacagtacagcagccag
aaaaagcatgaaatcagtcccaaaataacagaacttcagcgtcaaatgttaaattggatg
caaagttaccgagaggaacgcagtgctaaggtactggaaggccacaataaggtggcttaa
gagaactttctcttctccaggctgaaacaacatcggatctctccgcctttcttaacagga
gaggtgctccagccctctgattgtcttcgtggccctcctctggaccctctcaaacaaacc
cacatccttcttgtgctgggggccccagagctgaatgtggtactctatatactaatcata
acaagaatggactctgagagagaaaaagctgctctcattcacactttatctagagtagaa
ggtttaaaagctatcgatttgaattatgagaaaaaaggaaccttcctaggtcgtaaagat
gtcgtaagcaatagatactcctgtgttattgtacaaaatcagcaaattggagctgacttc
ccttggactcacttctcattggtgatagaatatgattattctgaaaattcttgctggaaa
aatcggtgtgaaaatctaaatattacttacatgacttttaaaaccaccctccctgaaaca
agacaaatgggaaatcactgtggttcctttcttctggaagtacagattccctatgtgttt
ctcacaactgaaggtcttcttaatatgcctgattttcttcagctgttggaatccaattac
agcattacctttgttgaaagaagctgcagtcactccttaaggctatttggagacacagat
cgatacgttgtgttgacaatagatgaatgcactgctatctttttgcagaatttggatgaa
ttaaattacgagaaatcctgtgacaatgtaatactgaagctgacggcgttatcactccaa
tatacatgctgctgggttgttttctattccagagaaagactgagtttagagtacagtctc
aggggagatactctgcttaacctggtaataatttatgccactctgattgaattaacacag
aagtcagaagactttgaagtgaaggtatttcttacgccagggattgaagaggcagcactg
ttaattcgtctgattgctgacaacgttttaatggcatctagtatcagtcctcttgagtgg
ttggacaaatcctggctttctgttttgccttctgagatggagaaatgcctgcttactttt
ccatgtatcaaccctctggttgctcagtttatgttaaagaagggatcttctttgagtagg
ctgtttcttgcaagttttgttcaacttcaggagctcctgccagaggttccaaaaaaagtt
ttaaagcattttagtgacatgacatctatgtacagcctaaatgctgctggtccactaaaa
acagcagtgaaaggtgcatcacccccagaaaactggaaaaacattaacagactctatcca
gcttgtaagcaaaattatcagtctttagagctgctggctaaggcacaaactagcacagga
ccacctcatgtgaattctgaagccatagttcctccaccgaactgtcatcagggtcttatt
gactctgacctttcaagctatatgcaaaagaaatcatgttcttcagaagtagttacaggg
agaaaacagaattcctttgttgtgccaaaggactgtgaaggttttactcatccaggtgct
atgaattctttatttgttcaaagacagccctgcaggattaactgcagctctgatcattcc
tcaaaaaaacctgaacaagaggatttctttgcaactttcattgactgtgcacctcgcaag
aactctaagggctttctagaagaatttagagaaatgacatttaagagcccagaaattgtg
attgacgagaccccgtggaatggcttttcatctacctgcacatatgattcatttgcacct
aattcttttctctctgattcccttgctgatccagatgagcctcaaagtctgcattttcat
cacctaggtagagaatcttcaggaaagagaaagcaaagtccaccatacttatggacaaaa
ggaaaaacattaacagattcaggatttgaagaagtaccagggatcaagaaaaggagattg
atgtatgaaagagtccctggaagaagtgatggacaaacacgtcttaaattcttttga

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