Cygnus atratus (black swan): 118257046
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Entry
118257046 CDS
T09349
Symbol
TNC
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04510
Focal adhesion
cata04512
ECM-receptor interaction
cata04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118257046 (TNC)
04518 Integrin signaling
118257046 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118257046 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cata00536
]
118257046 (TNC)
Glycosaminoglycan binding proteins [BR:
cata00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118257046 (TNC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Fn3_PBP1
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Pur_ac_phosph_N
DUF7949
EGF
NDNF
Interfer-bind
EGF_PEAR1L
hEGF
DUF4998
Big_5
Motif
Other DBs
NCBI-GeneID:
118257046
NCBI-ProteinID:
XP_035420484
LinkDB
All DBs
Position
19:9106365..9180345
Genome browser
AA seq
1807 aa
AA seq
DB search
MGLPTQVLACAILALLYQHVSGGLIKRIIRQKRETGLNVTLPEDSQPLVFNHVYNIKLPV
GSLCSVDLDTASGDADLKAEIEPVKNYEEHTVKDENQIVFTHRINIPRRACGCAAAPDIK
DLLSRLEELEGLVSSLREQCASGAGCCPNSQTAEGRLDTTPYCSGHGNYSTEICGCICEP
GWKGPNCSEPACPHHCFNRGMCLQGKCICDEGFTGEDCSQASCPSDCNDQGKCVDGVCVC
FEGYTGTDCSEELCPHGCSVHGRCVGGRCVCHEGFTGEDCSEPLCPNNCHNRGRCVDNEC
VCDEGYTGEDCSELICPNDCFDRGRCVNGTCFCEEGYTGEDCGDLTCPNNCNGNGRCENG
LCVCHEGFVGDDCSEKRCPKDCHNRGRCMDGRCVCHEGYLGEDCGELRCPNDCHNRGRCV
NGQCVCDEGFIGEDCGELRCPNDCNNRGRCINGQCECHEEFMGEDCGELRCPNDCNNHGR
CVNGQCVCDEGYTGEDCGELRCPNDCHNRGRCVEGHCVCDNGFTGEDCGELSCPNDCHQR
GRCVNGRCVCHEGFTGEDCRERSCANDCNNVGRCIDGQCVCEDGYMGIDCSDVSPPTELT
VTNVTDKTVNLEWKHENLVNEYLVTYVPTSSGGLDLQFTVPGNQTSATIHELEPGVEYFI
RVFAILKNKKSIPVSARVATYLPAPEGLKFKSVRETSVQVEWDPLSISFDGWELVFRNMK
KDDNGDITSSLKRPETSYMQPGLAPGQQYNVSLHIVKNNTRGPGLSKVITTKLDAPSQIE
AKDVTDTTALITWSKPLAEIEGIELTYGPKDVPGDRTTIDLSEDENQYSIGNLRPHTEYE
VMLISRRGDMESDPMKEVFVTDLDAPRNLKRVSQTDNSITLEWKNSHANIDNYRIKFAPI
SGGDHAEITVPKGNQATTRATLTGLRPGTEYGIGVTAVRQDRESAPATINAGTDLDNPKD
LEVSDRTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEVEIPVDSTSFILRGLEAGTEYT
ISLVAEKGRHKSKPTTVKGSTEEEPELGKLSVSETGWDGFQLTWTAADGAYENFVIQVQE
ADNPEETRNITVPGRLRFMNVTGLKANTPYNITLYGVINDYRTKPLSVETATGVHPEVGE
LTVSNITPESFNLSWTTTNGDFDVFTIEIIDSNRLLEPMEFNVSGNSRTAHISGLSPSTD
FIVYLYGISNGFRTQAISSAATTEAEPEVDNLLVSDATPDGFRLSWTADDGVFDSFVLRI
RDTKRKSDPLELIVPGHERTHDITGLKEGTEYEIELYGVSSGRRSQPINSVATTVVGSPK
GISFSDITENSATVSWIAPRTRVESYRISYVPVTGGTPNVVTVDGSKTRTKLVKLVPGVD
YNVNIISVKGFEESEPISGILKTALDSPSGLVVVNITDSEALATWQPAIAAVDNYVVSYA
SEDEPEVTQMVSGNTVEYDLNGLRPATEYTLSVHAVKDTQKSETLSTQFTTGMDAPRDLS
ATEVQSETAVITWRPPRAPVTGYLLIYESVDGKVKEVILDPETTSYTLAELSPSTQYTVK
LQALNRPLKSRTIQTIFTTTGLLYPYPKDCSQALLNGEVVSGLYTIYLNGDRTQPLQVFC
DMAEDGGGWIVFLRRQNGKEDFYKNWKSYVAGFGDPKDEFWIGLENLHKITSQGQYELRV
DLRDRGETAYAVYDKFSVGDSKTRYRLRVDGYSGTAGDSMTYHNGRSFSTFDKDNDSAIT
NCALSYKGAFWYKNCHRVNLMGRYGDNNHSQGVNWFHWKGHEYSIQFAEMKLRPSSFRNL
EGRRKRA
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgggactccccacccaggttttggcctgtgcgatcttagctttgctgtaccagcatgtc
agtggtggactcatcaagcgaattatccggcagaagcgggagactgggctaaacgtgacc
ttaccagaggatagccagcccctggtttttaaccacgtctacaacattaagttgcctgtt
ggctccctttgctctgtggacctggatacagcaagtggtgatgcagacctgaaggcagaa
attgagcctgtcaagaattacgaggagcacacggtgaaagatgagaaccagattgtcttc
acgcaccgtatcaacatcccccgccgggcttgtggctgtgcagctgccccagatattaag
gatctgctgagcagactagaggagctggaggggctggtatcctccctacgggagcagtgt
gccagcggggctggatgctgtcctaattcccagacagcagaaggtcgcctggacacgaca
ccctattgcagcggacatggcaactacagcactgagatctgcggctgcatctgcgagccc
ggctggaaaggccccaactgctctgaaccagcctgcccgcaccactgcttcaaccggggc
atgtgtttacagggcaaatgcatctgcgacgagggcttcactggtgaggactgcagccag
gcctcctgcccttccgactgtaacgaccaaggcaagtgcgtggacggggtttgtgtgtgc
tttgaggggtacacaggcacagactgcagcgaggagctctgcccccatgggtgcagcgtg
cacgggaggtgcgtgggcgggcggtgcgtgtgccacgagggcttcactggcgaggactgc
agcgagcccctctgccccaacaactgccacaaccgcgggcgctgtgtggacaacgagtgt
gtctgcgatgagggctacactggcgaggactgcagcgagctcatctgccccaacgactgc
ttcgaccgcgggcgctgcgtcaacgggacctgcttctgtgaggagggctacaccggagag
gactgtggggatctgacctgccccaacaactgcaatggcaatgggcgctgtgagaacggg
ctgtgtgtctgccacgagggcttcgttggggatgactgcagtgagaagaggtgcccgaag
gactgccacaaccgtgggcgctgcatggacgggcgatgcgtgtgccatgaggggtacctg
ggcgaggactgcggggagctgcggtgccccaacgactgtcacaaccgcggacgctgcgtc
aatgggcagtgcgtgtgcgacgagggattcatcggggaggactgcggggagctgcggtgc
cccaatgactgcaacaaccgcgggcgctgcatcaacgggcagtgtgagtgccacgaggaa
ttcatgggggaggactgtggtgagctgcggtgccccaacgactgcaacaaccacgggcgc
tgcgtcaacgggcagtgtgtgtgtgacgaggggtacacgggagaggactgtggtgagctg
cggtgccccaacgactgccacaaccgtgggcgctgcgtggagggacactgtgtgtgtgac
aatggcttcacgggagaggactgcggtgagctgtcctgccccaatgactgccaccagcgt
gggcgctgtgtcaacgggcgctgtgtgtgccatgagggcttcactggggaagactgccgt
gaacggtcctgcgccaatgactgcaacaacgtgggccgctgcatcgatggacagtgtgtc
tgcgaggatggttacatgggaatcgactgctctgatgtgtctcctccaacagagctgact
gtaacaaatgtaacagataaaactgtaaatctggaatggaagcatgagaatctcgtcaat
gagtaccttgtcacctatgtccctaccagcagtggtggcttagatctgcagttcactgta
ccaggaaaccagacatctgccaccattcatgaactggagccgggtgtggaatattttatc
cgtgtctttgcaatccttaaaaacaagaagagtattccagtcagtgccagagtagcaaca
tatctgcctgctccagaaggtctgaaattcaaatctgttagagaaacatctgtccaggta
gagtgggatcctctgagcatttcatttgatggctgggagctggtcttccgtaatatgaaa
aaggatgataatggagatataaccagcagcttgaaaaggccagagacatcatatatgcag
ccaggcttggcaccagggcaacagtataatgtatcccttcatatagtgaaaaacaatacc
aggggaccaggactatccaaagtgataaccacaaagcttgatgcccctagccaaattgag
gcaaaagatgtcacagacaccacagctctgatcacatggtccaaacccttggctgaaatt
gaaggcatagagctcacctatggccccaaggatgttccaggggacaggactaccattgac
ctctccgaggatgaaaaccaatattctattggaaacctgagaccccacacagaatatgaa
gtgatgcttatctctcggcgaggggacatggaaagtgaccccatgaaagaagtctttgtc
acagacttggatgctccaagaaacctgaagcgagtttcacagacagacaatagcattact
ttggagtggaagaacagccatgcaaatattgataattaccgaattaagtttgctcccatt
tctggaggagaccatgctgagatcacagtgccaaagggcaaccaagcaacaaccagagct
acactcacaggtttgaggcctggaactgaatatggcattggagtgacagcagtgagacag
gacagggaaagtgctcctgctaccattaatgctggcactgatcttgataaccccaaggac
ttggaagtcagtgaccgcactgaaaccaccctgtcacttcgctggagaagaccagtggcc
aagtttgatcgttaccgcctcacttacgtcagtccttctggaaagaagaatgaagtggag
atccctgtggatagcacctcttttatccttcgagggttagaggcaggaacagaatacacc
atcagtctggtggcagagaagggcagacacaaaagcaaacccacaactgtcaagggatcg
actgaggaagaacctgagcttggaaaattatcagtatcagagactggctgggatggtttc
cagctcacctggacagcagctgacggggcctatgagaactttgtcattcaggtgcaggag
gctgacaacccagaagaaacccggaatatcacggtcccaggcagactgcgctttatgaat
gttacaggcctcaaggccaacacaccttataacatcacactttatggtgtgattaacgac
tacagaaccaaacccctttctgttgaaacggcgacaggggtgcacccagaagttggtgag
ctaaccgtttccaacattactcctgaaagcttcaacctttcttggacaaccaccaatggg
gacttcgacgtctttactattgaaattattgattctaacaggttgctggagcccatggag
ttcaacgtctcaggcaattcaagaacagctcatatctcggggctttcccccagcactgat
tttatagtctacctctatgggatctctaatggtttccgcacacaggcaataagctctgca
gctacaacagaagcagaacccgaggtcgacaaccttctggtttcagatgctactccagac
ggcttccgtctgtcctggactgcggatgatggggttttcgacagttttgttctaaggatc
agggataccaaaaggaagtctgatccactggaactaatagtaccaggccatgagcgcacc
cacgatataacagggctgaaagagggtactgagtatgaaattgagctctatggagttagc
agtggacggcgttcccaacccataaattcagtagcaaccacagttgttggatctcccaag
ggaatctcattctctgacatcacagaaaactctgctacagtcagctggatagccccgcgc
acccgcgtggagagctacaggatctcctacgtccctgtcacaggaggtactcccaatgtt
gttacggtagatggaagcaagacaaggaccaagttggtgaagttagtcccaggtgtagat
tataatgttaatatcatctctgtgaaaggctttgaagaaagtgaacccatctctggaatt
ctgaaaacagctctggacagcccatcaggactggtggtggtgaacattacagactcggag
gctctggcaacctggcagccagcaattgctgctgtggataactatgttgtctcctatgct
tctgaggatgagccagaagttactcagatggtatcaggaaacacggtggagtatgacctg
aatggccttcgacctgcaactgagtatacactgagcgtccatgcagtgaaggacacacaa
aaaagcgagaccctctccacgcagttcactacaggaatggatgctccaagagatttaagt
gccactgaggttcagtcagaaacagctgtgataacttggaggcctccacgtgctcctgtc
actggttatctcctgatctacgagtctgttgatggcaaagtcaaggaagtcatcctagac
cctgagacaacttcctacaccctggcagagctgagtccatctacccagtacacggtaaaa
ctccaggcactgaacagacccctgaagagcagaacaatccagactattttcaccacaact
ggtcttctctatccttaccctaaagactgctcacaggctctcctgaatggagaagtcgtc
tctgggctctacacaatttatctgaatggggacaggacccagcctctgcaagtcttctgt
gacatggccgaagatgggggcggatggattgtattcctgaggcgccaaaatggaaaggaa
gatttctacaagaactggaagagttatgtggctggctttggagatcctaaggatgaattc
tggataggtcttgagaacctccacaaaatcacttctcagggccagtatgaactgcgtgtg
gatctgcgagacagaggcgagacagcttacgctgtgtacgacaagttcagcgtcggggac
tcgaagacccggtaccggctaagagtggatggctacagcggcacagcaggtgactccatg
acctaccataatggcaggtccttctctacctttgacaaggacaatgattctgctatcacc
aactgtgctttgtcatacaagggtgcattctggtacaagaactgtcaccgagtcaatctg
atgggcagatatggtgacaacaaccacagtcagggtgtaaactggttccactggaagggc
cacgagtactccatccagttcgcagagatgaagctgagaccttcaagcttccgaaatctg
gaaggaagacgaaagcgagcataa
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