Cygnus atratus (black swan): 118257213
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Entry
118257213 CDS
T09349
Symbol
DDX55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cata03009
]
118257213 (DDX55)
Enzymes [BR:
cata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118257213 (DDX55)
Ribosome biogenesis [BR:
cata03009
]
Eukaryotic type
Pre-60S particles
Helicases
118257213 (DDX55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
CTT_SPB4
SBF_like
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118257213
NCBI-ProteinID:
XP_035420813
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Position
17:complement(11961059..11967843)
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AA seq
597 aa
AA seq
DB search
MEAVTEGRWEALPVALSPGVLRALRGLGFASMTPVQSATIPLFMSNKDVAAEAVTGSGKT
LAFVIPILEILLRREQKLKKMQVGAIIITPTRELAIQIDEVLSHFTKHFPMFSQILLIGG
RNPMEDVEKFKEHGGNIIVATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMG
FESSLNAILDFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASNTQKTPT
RLENYYMICKADEKFNQLVHFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQAKIMCIH
GKMKHKRNKIFTEFRKLPGGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTA
RIGNVGSALVFLLPMEESYVNFLSINQKCPMQEMKPQKNVLDLLPKLKSMALADRAVFEK
GMKAFVSYIQAYAKHECNLIFRIKDLDFASLAKGFALLKMPKMPELRGKCFPDFTPVAVN
TDSIPFKDKNREKQRQKQLEQQRKERQESGGKKKFIKNKSWSKQKAKKEKKKKATAKRKR
EEGSDVDDEDMEELLNDTRLLKRLKKGKISEEEFEKRLTGTQSKVKAETVADLESEC
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtgacggaggggcgctgggaggcgctgcccgtggcgctcagccccggcgtg
ctgcgggcgctgcggggcctcggcttcgccagcatgaccccggtgcagtccgcaaccatt
ccgctcttcatgagtaacaaagatgttgctgcggaagcggtaacaggcagcggcaaaacc
ttagccttcgtaattcccatcctagaaattcttctcagacgggaacaaaaattgaaaaaa
atgcaggttggagctataattatcacaccgacaagagaattagctattcagattgatgag
gtattatcgcacttcacaaaacacttccccatgtttagtcagattcttttaataggcggt
aggaatcccatggaagatgttgaaaaatttaaagaacacggcgggaacatcattgtagct
acgccaggccgcttggaggatctgttcagaagaaaagcagatgggctggatctcgcaagc
tgtgtgaagtctctcgatgtgttggtgttagatgaagcagacagacttctcgatatgggc
tttgaatcaagtttaaatgccattctggactttttacccaagcagagacggacaggtctc
ttctcagcaactcagactcaagaggtggagaacctggtgagagcaggtctccggaatcct
gtccgcatctcggtgaaagagaagggagtggcagcaagcaacacacagaaaactccaacg
cgcctggagaactactacatgatatgcaaagcagacgaaaagttcaatcagttggtgcac
tttcttcgacagcacaaacaggaaaaacatctagtctttttcagcacatgtgcctgtgtg
gaatactatgggaaggctttggagtccttaattaaacaagcgaaaataatgtgcattcat
gggaagatgaaacacaaacgtaacaagatttttaccgagtttcggaagctcccaggtggc
attttagtttgcactgatgtgatggcccggggcatagacattccagaggtacactgggtt
ttgcaatatgacccacctagcagcgcaagtgcctttgtgcaccggtgtggtcgaacagca
cggattggcaatgtcggcagtgcacttgtatttttgcttcccatggaagaatcttatgtt
aactttctctcaatcaaccaaaagtgtcccatgcaggaaatgaaaccacagaaaaatgtg
ttggatcttcttccaaaactgaagtctatggccctggctgacagggcagtgtttgagaaa
gggatgaaagcatttgtgtcttacatccaggcttacgccaaacacgagtgtaatctgatc
ttccgaataaaagatctggattttgctagtcttgccaaaggttttgccttgttaaaaatg
ccaaagatgcctgaactaagaggaaaatgttttccagactttactccagtcgctgttaat
acagactccattccatttaaggataaaaatagagaaaaacagagacaaaaacaactagaa
caacaaagaaaggaaagacaggaaagtggaggaaaaaagaaattcataaagaacaaatcc
tggtcaaagcagaaagccaaaaaggagaagaaaaagaaagcaacagcaaaaaggaaacgt
gaagagggctctgatgttgacgatgaggacatggaagagttgctgaatgacacaagactc
ttgaaaagattaaaaaaggggaaaattagtgaagaagagtttgagaagagactaacaggc
acccaaagcaaagtgaaagcagaaactgttgctgacttagagtctgaatgttga
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