KEGG   Cygnus atratus (black swan): 118257396
Entry
118257396         CDS       T09349                                 
Symbol
SEH1L
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
cata  Cygnus atratus (black swan)
Pathway
cata03013  Nucleocytoplasmic transport
cata04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:cata00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    118257396 (SEH1L)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    118257396 (SEH1L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cata03019]
    118257396 (SEH1L)
   04131 Membrane trafficking [BR:cata04131]
    118257396 (SEH1L)
Messenger RNA biogenesis [BR:cata03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     118257396 (SEH1L)
Membrane trafficking [BR:cata04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    118257396 (SEH1L)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th Beta-prop_WDR3_2nd Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_TEP1_C
Other DBs
NCBI-GeneID: 118257396
NCBI-ProteinID: XP_035421239
LinkDB
Position
2:complement(104880836..104894133)
AA seq 419 aa
MFVARSIAADHRDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSP
MIAVGSDDNSPNILAKVQIYEYNENTRKYAKAEALMTVTDPVHDIAFAPNLGRSFHILAV
ATKDVRIFTLKPLRKELSSSGGLTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGNGSPVNGGSQQGIFNTSLGSANTSLQNSLNGSSASRYFF
PPLDSPRAGSRWSSHAQLLPPPPLIEHSCDADTANLQYPHPRRRCVSRPLNLLPENEGV
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgtttgtggcgcgcagcatcgcggcggatcaccgcgacctcatccacgatgtctccttc
gacttccacgggcggcgcatggccacctgctccagcgaccagagcgtcaaggtctgggac
aaaagcgaaaatggggattggcattgcactgcgagctggaagacacatagtggatctgtg
tggcgtgtgacatgggcccatcctgaatttgggcaagtcctggcttcctgctcttttgat
agaacagcagctgtgtgggaagaaatagtgggagagtcaaatgataaactccgaggccag
agtcactgggtaaagaggaccacgttagtagacagtaggacatctgttacagatgtgaag
tttgctcccaagcacatgggtcttatgttagcaacttgttcagcagatggagttgtaagg
atttatgaagcccctgacgtgatgaatctcagtcaatggtcactgcagcatgaaatctcc
tgtaagctaagctgcagttgcatttcttggaatccttcaagctctagagcacattctcca
atgatagctgtaggaagtgatgacaacagtccaaatatattggcaaaggttcaaatttat
gaatataatgaaaataccaggaaatatgcaaaagcagaagctctgatgacagtcacagat
cctgtacatgatattgcatttgctccaaatctgggaagatccttccacatcttagctgta
gcaaccaaagatgtacgaattttcacactaaaacctctaaggaaagaattgagttcatct
ggaggattaacaaaatttgaaattcatattgtggcacagtttgataatcacaattcccag
gtgtggcgagttagctggaacattacaggcacagtgcttgcctcttctggtgacgatggc
tgcgttaggctctggaaagctaattacatggacaactggaagtgtactggtatactgaaa
ggtaacgggagtccagtcaatggtggttcccagcagggaatttttaacacctctctaggt
tcagccaatacaagcctacagaattcactaaatggatcatctgccagcaggtatttcttt
ccccctctggattccccacgggctggatcgaggtggtccagtcatgcccagctccttcct
cctcctcctctgatagagcactcttgcgatgctgacactgccaacctccagtatcctcac
cctcgcagacgatgtgtgtctcggcctcttaatctattacctgagaatgaaggggtttaa

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