Cygnus atratus (black swan): 118257515
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Entry
118257515 CDS
T09349
Symbol
COL4A2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04382
Cornified envelope formation
cata04510
Focal adhesion
cata04512
ECM-receptor interaction
cata04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118257515 (COL4A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118257515 (COL4A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118257515 (COL4A2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118257515 (COL4A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cata04147
]
118257515 (COL4A2)
00536 Glycosaminoglycan binding proteins [BR:
cata00536
]
118257515 (COL4A2)
Exosome [BR:
cata04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118257515 (COL4A2)
Glycosaminoglycan binding proteins [BR:
cata00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118257515 (COL4A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118257515
NCBI-ProteinID:
XP_035421496
LinkDB
All DBs
Position
1:146601791..146740506
Genome browser
AA seq
1714 aa
AA seq
DB search
MDISQLPSARGLVCQDLGVVLVLLEVVLSAVRVDAGGKTYTGPCGGRDCSGGCQCFPEKG
GRGQPGLLGSQGFPGPPGLMGIPGVQGPKGHKGERGHPGISGPKGEMGLRGVTGFPGADG
VPGHPGQPGSRGKPGHDGCNGTVGDPGDSGTPGLSGFPGTIGVQGPKGQKGEPYILPPDI
ASRYRGEPGDPGFSGFPGPPGILGVQGPVGPRGERGRPGPPGPPGPQGPQGNRGLGFYGE
KGEQGPPGPPGPPGLPTRELMGVPSDKHKGERGERGQKGEPGQPGIRYAGERGEKGVMGF
SGQRGLPGIDGSPGLSGERGFSGPDGLPGGYGPRGAKGEQGAMGPPGPPVYVPYHIPRKG
TRGEPGFPGASGLHGEPGEQGDRGLPGLPGFSDGDADKPGLPGEMGPKGEKGELGSPAYQ
AGPPGFPGKHGEPGLRGPPGPAGIPGSLFGLKGREGTPGRPGTQGYPGPRGQKGPKGEEG
DCSKCLLGDELRRGSTGPPGPPGFPGTPGQPGRKGEPGDQGPHGIPGYPGAKGLSGQEGF
PGPKGEKGDSFYITTKGTKGIRGDPGLPGIRGGDGFPGRDGLDGLPGQPGLPGDTISGFP
GDPGYPGELGPKGFPGETGLPGEGFVGPKGYRGPPGDHGTDGSPGPPGLPGPPGEPGQLD
CGQVIEDFSRGDGTEPIWSGGGCVRPPKGSQGKPGLPGATGAKGTRGFPGDPGPVGYPGL
NGTRGDPGREGLPGPPGFTGPRGDRGPNGLPGLQGHPGLTGKSGAPGLAGQKGVPGEVLR
ATAGSRGDAGLPGFPGLKGTPGDQGVPGVRGADGSPGLPGAKGDPGLQGLPGLMGLPGSP
GTHGFPGPPGNPGPDGGPGSQGPLGPPGARGEDGEQGFPGPVGLKGLSGEKGETGYPGLQ
GIPGVIGPPGISGMDGFPGDKGLRGSPGVDGFKGMPGLKGRPGIKGIKGEFGSFGARGDK
GTQGARGFKGDRGEQGPPGEPPKLKPSMMMEVKGEKGDVGETGTKGFFGLKGSKGMPGLP
GKTGTPGSPGHPSYVVGVKGDIGEKGLTGLKGYPGPAGSPGIRGFPGSTGGRGDKGVPGI
SGHFGTPGSHGEIGEPGDTINLPGMPGLKGEVGVPGLTGLRGGPGQKGEGGEPGNPGIEG
IRGTQGVPGSLGQEGLPGLVGPPGQQGSPGTPGSQGEKGTPGWPGLPGQAGLPGLRGISG
LHGLPGTKGLPGSPGPDGYGSAGFPGTVGDKGEAGEPSRVEGSRGPPGQKGDRGVPGIQG
PFGIPGQDGFPGPPGISNISGYPGDKGSPGLDGVPGYPGLQGQPGIPAPPGSKGESGQVG
VSGQTGPKGDRGDPGLAGRPGIPGYPGPKGRKGEQGVIGFMGTVGFPGDLGPIGPKGDRG
LTGFQGPPGSPGLPPLPPRLFAEQGSPGPRGNTGPQGSPGDMGPQGPPGDPGFRGSPGDP
GLQGRGGIPAPPGSRGEQGAMGFQGPVGFEGQPGRPGSPGLPGMPGRSVSIGYLLVKHSQ
SDQEPMCPIGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDICYY
ANRNDKSYWLSTTAPLPMMPVAEEEIRPYISRCSVCEAPAVAIAVHSQEASIPRCPEGWR
SLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLT
TIDQPFQSKPSADTLKAGLIRSHISRCQVCMKNL
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atggacatctcgcagcttcccagcgcgcgtggtttggtttgtcaggatctgggggtcgtg
ctggtcctgctggaggtggtgctgtcagccgtcagagtagatgctggtggaaagacttac
acaggaccatgtggaggaagagactgcagtggaggatgccagtgttttcctgaaaaagga
ggccgtggccagccaggactccttggatcacaggggttccccggaccaccaggattgatg
gggatcccaggagtgcaaggtcccaaaggtcacaaaggtgaaagaggacatccaggaata
agtggacccaaaggagaaatgggactaagaggagtcactggattcccaggggcagatggc
gttcctggtcatccagggcagccaggatcaagggggaaaccgggtcatgatggctgtaac
gggacagtaggtgaccctggcgactcaggaactccaggactctctggtttccccggtacc
attggagtccaaggaccaaagggccagaagggggagccctatatactaccaccggacatt
gccagccgataccggggagaacctggggatccaggattcagtggttttccaggacctcca
ggtatactgggtgttcaaggacctgttggtccaagaggagagcgaggaagaccaggacca
ccagggcccccaggaccacaaggaccacaaggcaacaggggccttggcttctatggagaa
aaaggtgaacagggacccccaggtccacccggtccacctgggcttcctacaagagaactg
atgggtgtcccctctgacaaacacaagggtgaaagaggagaacgtggacaaaaaggggaa
cctggacaaccaggtatacggtacgctggtgaaagaggtgaaaaaggggtaatgggcttc
tcaggacaaaggggactgcctggtatcgatggctctccgggactcagtggagaaagaggt
ttttcaggacctgatggcctaccaggtggatacggtcctagaggagccaagggagagcag
ggcgcgatgggtcctcctggaccacctgtctatgttccataccacattccaagaaaaggt
acaagaggtgaaccaggctttccgggtgcttctggactacacggagaaccgggagagcag
ggagatcgtgggctgcctggtcttcctggattctctgatggagatgcggataagccaggt
ttacctggagaaatgggaccaaaaggtgaaaaaggtgaattaggatctcctgcttatcag
gcaggcccacctgggtttccgggtaagcacggtgaaccagggctccgtggtcctcctggt
cctgctggaattcccggttctctctttggattaaaaggacgggaagggacaccaggtaga
cctggcacacaaggttaccctgggccaagaggacaaaaaggacccaaaggcgaagaaggg
gattgcagtaaatgccttctgggtgatgaactccgaaggggctccactggcccccctggc
ccgcctggttttccaggaacccctggccagccagggagaaaaggagaacctggtgatcaa
ggtccacatggtattcctggctaccctggagcaaaaggattgtccggtcaagaaggattt
ccaggaccaaaaggagaaaagggagattctttttacataactactaaaggcaccaaagga
atccgaggagatcctgggcttcctggtatcagagggggagatggttttccaggcagagat
ggattagatggtttaccaggacagcctggccttccaggtgatactatcagcggcttcccc
ggcgatcctggttatccaggtgaattaggcccaaagggctttccaggggaaacgggtctg
ccaggtgaaggatttgttggtccaaaagggtaccgtggtcctccaggtgaccatggaaca
gatggaagccctggacctccaggtcttcccggtccaccaggagagcctggccaactagac
tgtgggcaggtcattgaagacttttctagaggagatggaactgaaccaatatggtcaggt
gggggctgcgtgaggccaccaaaggggtcccagggcaagccaggactgccaggagccaca
ggtgctaaaggtacaagaggattcccaggtgatccaggcccagtgggatacccagggctc
aatggtacacgaggtgatccaggtcgggaaggattgccaggtcctccaggttttactggg
cctcggggagacaggggcccaaatggactacctggactacagggacacccaggccttaca
ggaaagtctggtgctccaggactggcaggacagaagggcgttcctggtgaagttttaaga
gcaacagcaggttctcgaggggatgctgggctgcccggcttccctggcttgaaaggcaca
cctggagatcaaggagtaccgggagttagaggagcggatggtagcccaggcttgccagga
gccaaaggcgatccagggctgcaaggtctccctggtctgatgggtttgccaggatcacca
ggaacacatggattcccaggcccaccagggaaccctgggccagacggcggacctgggtct
caaggaccccttggtccaccaggtgcaagaggagaagatggtgagcaaggttttcctggt
cccgtgggcctgaaaggtctgtctggtgaaaaaggtgaaacggggtacccaggattgcaa
ggtatacctggcgtgattggtccccctggcatcagtggaatggatggctttccaggagat
aaaggcttaagaggttcacctggcgttgatggtttcaaaggcatgccaggcctgaaagga
agaccaggaatcaaaggaatcaaaggagaatttggttcattcggggctcggggcgataaa
ggcacacagggcgcacgaggctttaaaggtgaccgtggggaacagggtcccccaggagag
cccccaaagctgaagcctagcatgatgatggaagttaaaggtgaaaaaggagatgttgga
gaaaccggcaccaagggattcttcggcttgaaaggtagcaagggaatgccaggcctcccc
ggtaagacaggaactcccgggtctccggggcaccccagttacgtggttggtgtgaagggg
gacattggtgaaaaaggactgacaggtctgaaagggtatcctggtccggctggctctcct
ggcatcagaggcttccctggcagcacaggaggcaggggagataagggtgtcccaggaatt
tcaggccattttggtactcctggctcccatggtgaaataggtgagccgggagatactata
aacttaccaggaatgccaggtcttaaaggggaagttggtgtgccaggcctaacaggctta
agaggaggcccaggacaaaaaggcgaagggggtgagcctggtaaccctggcattgagggc
atcaggggcacacagggtgtccctggctccttgggacaggaaggattgccgggactggtt
ggccccccagggcagcaaggaagccccgggacacctggatctcaaggtgaaaagggaact
cctggctggcctggcttacccggacaagcaggcttgcctggcttgagaggaatcagtgga
ctgcacggtttaccaggcactaaggggctgccaggatcaccaggtccagatggctatggc
tctgcaggcttcccaggtaccgtgggtgacaaaggagaagcaggagagccgagcagagtg
gaaggcagccgaggccctccgggtcagaagggagacagaggtgttccagggatccaagga
ccctttggcattcctgggcaggatggatttccagggcctcccgggatttcaaatatatca
ggatatcctggtgataaaggttccccaggtctggacggagtgccaggctatccaggacta
caggggcagcctggaataccagctccacctggaagcaaaggagaaagcggacaagtaggt
gtgagcggacaaactggcccaaaaggagatagaggtgatcctggattagcagggagacct
gggattcccgggtaccctgggccaaaaggtcgcaagggtgagcaaggtgtcatcggcttt
atgggcacagtaggatttccaggtgatctgggacccatcggacccaagggggacagagga
ctaactggctttcagggccctccaggctctcctgggctgccgcctcttcctccaaggctg
tttgctgagcaaggttcaccaggtccccgtggaaatacaggacctcagggaagcccagga
gatatgggccctcagggtccaccaggcgatccaggttttagaggctcacctggagaccca
gggctccagggcagaggtggcattccagctcctccgggatccagaggtgaacaaggagca
atggggtttcaaggtccagtgggatttgaaggccagccaggccgccccggtagccctggg
ctgccaggcatgccgggtcgtagcgtcagcatcggctacctgctggtgaagcacagccag
tccgaccaagagccgatgtgtccgatcggcatgaacaaactgtggagtgggtacagcctc
ctgtacttcgaagggcaagagaaagcacacaaccaggacctaggtctggccggctcatgc
ttggctcgtttcagtacaatgccattcctctactgtaacccgggggatatttgttattat
gcaaatcgaaatgataaatcctactggctctcgactacagcacctctcccaatgatgcct
gtggcagaagaagaaattagaccatatatcagccgctgctcagtctgtgaggccccagct
gtggcaattgctgtccatagccaagaagcttctattcctcgctgccctgaaggctggcgc
agtttgtggattggatattccttcctcatgcacactgcggctggtgatgaaggtggagga
cagtcgctggtttctcctgggagctgcctggaagatttcagagctactcctttcatcgaa
tgcaacggcgcacgcggaacctgtcattactttgcaaataaatacagcttctggctcact
acgattgaccagcccttccaaagcaagccctcagcagatacactcaaggcaggactcatc
cgaagccatatcagcaggtgccaagtctgtatgaaaaatttatag
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integrated database retrieval system
