Cygnus atratus (black swan): 118257754
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Entry
118257754 CDS
T09349
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118257754 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cata03041
]
118257754 (PRPF40A)
Spliceosome [BR:
cata03041
]
Complex A
U1 snRNP components
U1 related factors
118257754 (PRPF40A)
Complex B
118257754 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
118257754
NCBI-ProteinID:
XP_035421987
LinkDB
All DBs
Position
6:complement(38963665..38985598)
Genome browser
AA seq
1024 aa
AA seq
DB search
MSGGDSAAAAAAASPQPLPFSLPKPPPLMQLTPGDAVRPVAAAAADQSPKGSRLAGRPDW
PAGKPVSLLAPLLPPRGEPEPLMPFGPSSRQPLRGRLLGRCGGGSLLSPAMRPGAVDRGS
LMMGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGM
MMSHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQSSVLFRPQTTHPVVCAAQQTATTNSSV
NEEHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSG
KPYYYNSQTKESRWAKPKELEDLEAMIKAEENSTKPEESTATSSATGEAANTTTTATTAA
ETAAAVTTTTTAATAASEGETAAASGTENESTAAATAEEQGQQATSAPAAQEQSAETAAN
AADDSSKQEGSADASSKKEDDDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQA
MKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMT
STTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNIL
DNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQK
SLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPVFSSG
STALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDA
GNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRF
VKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSES
EDDDSHSKKKRQRSESRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIEREK
DKKERERESEKDRARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQL
DEDQ
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcgactccgcggcggcggcggccgcggcctcccctcagccgctgcccttc
tcgctgcccaagccgccccccctcatgcagctgacgccgggggacgccgtccggcccgtg
gccgccgccgccgccgaccaatcgccgaagggcagccggctggcgggccgccccgattgg
ccggcgggcaagccagtcagcctgctggcgccgctgctcccgccccgcggcgagcccgag
cccctgatgcccttcgggccctcgtcgcggcagccgctgcgggggcggctcctgggcagg
tgcggcgggggcagcctgctgagccccgccatgcggcccggggctgtcgaccgcggctcg
ctcatgatgggacacccagggatgccacattacccgcccatgggaatgcaccccatgggg
cagaggccaccgaatatgccgccggttccgcatggtatgatgcctcagatgatgcctccc
atgggaggaccgccgatggggcagatgcctggaatgatgcagtcggtaatgcctggaatg
atgatgtctcacatgtcccaagctgctatgcagcctacagttccgccaggggtgaacagc
atggacgcgcaagtaggtgtaacgccacctggaactcagagctctgttttgtttcgccct
cagacaacacatcccgtagtttgtgcagctcagcaaaccgccacaaccaacagttctgtt
aatgaagagcactctaaacagaaatctacatggacggaacacaaatcacctgatggaaga
acatactactataatactgaaacaaagcagtctacctgggagaagccagatgatctcaaa
acaccagctgagcaattgttgtcgaagtgtccctggaaagagtacaaatctgactctgga
aagccatactactataattcccaaacaaaggaatcacgctgggcaaaacccaaagaactt
gaagatcttgaagcaatgattaaagcagaagaaaacagcaccaagcctgaagagtcaact
gcaacgtcatctgctacaggagaagcagcaaacacaaccaccacagccaccactgctgcc
gaaaccgcagcagctgtaaccaccaccactactgcagcgacagcagcctctgaaggagaa
actgctgcagcgtctgggacggaaaatgagagtactgccgcagccacagcagaggaacag
ggacagcaagcaacttctgcacctgctgcacaggaacagagtgcggaaactgcagctaat
gcagcggatgattcttccaagcaggagggttcagcagatgcttcttcaaagaaagaagac
gatgatgcacagccagttaaaaaaacctacacgtggaatacaaaggaagaagcaaagcaa
gcatttaaagaactcctaaaagaaaagagagtaccgtctaatgcgtcttgggagcaagct
atgaaaatgatcattaatgatcctagatacagtgctttggcaaagttgagtgaaaaaaag
caagcctttaatgcttacaaagttcaaacagaaaaagaagaaaaagaagaagcaagatca
aaatacaaagaagctaaagaatccttccagcgttttcttgaaaaccatgaaaagatgaca
tccacaacaagatacaaaaaagctgaacaaatgtttggggagatggaagtctggaatgca
atatctgagcgtgatcgtcttgaaatttatgaggatgtcttgttttttctgtctaagaaa
gagaaggaacaagccaaacagttgcgaaagaggaattgggaagctttaaagaacatacta
gataacatggctaatgtcacttactgcactacttggtcagaggctcagcagtatctgatg
gacaatcctacgttcgcagaagacgaggaacttcagaatatggataaggaagatgcgctg
atctgttttgaagagcatatcagggcactggaaaaagaggaggaagaagaaaaacagaaa
agcttgcttagagaaagaaggcggcagcgtaaaaatagagaatcttttcagatattttta
gatgaacttcatgagcatggacaattacattcaatgtcctcttggatggagttgtaccca
accataagctctgacatcagattcactaatatgcttggtcaacctgttttttcatcagga
tcgacagcacttgatcttttcaagttctatgttgaagacttaaaagcacgttaccatgat
gaaaagaagataataaaagatatcttaaaggataaaggatttgtggttgaagtgaacact
tcttttgaagactttgttacggtcatcagttcaactaaaagagctacaactttagatgca
ggaaatatcaagctggctttcaatagtctgctagaaaaggcagaagctcgtgaaagagag
agggaaaaagaagaagctcgtaaaatgaagcgcaaagagtctgccttcaagagtatgttg
aaacaagctactcctccgattgaattggatgctgtctgggaagatatcagagatagattt
gtgaaagaaccagcatttgaagacatcactctagagtctgaaagaaaaagaatatttaaa
gatttcatgcatgtactagagcatgaatgtcagcaccatcattcaaagaacaagaaacat
tctaaaaagtctaaaaaacatcacaggaagcggtctcgctctcgttcgggctcagagtct
gaggatgatgatagtcattcaaagaagaaaaggcaacggtcagaatccagatctgtttct
gagcgttcttccagtgcagaatctgagagaagttacaagaagtcaaaaaaacacaagaaa
aagagcaagaagagaagacataagtctgattcaccagaatcagatattgaacgagaaaaa
gacaaaaaagaaagagagagagaaagtgaaaaggatagagctagacaaagatctgaatca
aaacataaatctccgactaaaaaacgacctggaaaagattctggtaactgggatacttca
ggcagtgaactgagcgaaggggagctggaaaaacagaggcggactcttttggaacaactg
gatgaagatcaatga
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