Cygnus atratus (black swan): 118257859
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Entry
118257859 CDS
T09349
Symbol
CDH1
Name
(RefSeq) cadherin-1
KO
K05689
cadherin 1, type 1, E-cadherin
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04371
Apelin signaling pathway
cata04514
Cell adhesion molecules
cata04520
Adherens junction
cata05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
118257859 (CDH1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
118257859 (CDH1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
118257859 (CDH1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
118257859 (CDH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cata03036
]
118257859 (CDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cata04515
]
118257859 (CDH1)
04090 CD molecules [BR:
cata04090
]
118257859 (CDH1)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
118257859 (CDH1)
Cell adhesion molecules [BR:
cata04515
]
Cadherins
Major cadherins
118257859 (CDH1)
CD molecules [BR:
cata04090
]
Proteins
118257859 (CDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
He_PIG
Motif
Other DBs
NCBI-GeneID:
118257859
NCBI-ProteinID:
XP_035422149
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All DBs
Position
12:complement(1209853..1218050)
Genome browser
AA seq
882 aa
AA seq
DB search
MGRQRGSLAPLCFPLLLLLQVGGRRCDEAAPCQPGFAAETFTFTVPRDSVAAGGVLGRVR
FSGCGGRSQAVYVPDDTRFEVDEDGIIQTKQPLQLHGRKIHFSVSALDATGKRHSAWVTV
EKRRWRQHHRHSYQDGVPYMLTFPESGPGLRRQKRDWVIPPISCLENHRGPFPMKLVQIK
SNKDKETKVFYSITGQGADSPPVGVFTIERETGWLEVTQPLDREEIGKYVLFSHAVSANG
QPVEDPMEIIITVTDQNDNKPVFTKQVFVGYIEENAKPGTSVMTVNATDADDAVNVDNGI
ISYSIVSQEPPRPHHQMFTIDPQKGVISVLGTGLDRETTPNYTLIVQATDQEGKGLSTTA
TAVIEVTDANDNIPVFDPNMYEGTVDENEVGLEVARLHVTDQDMPGSPAWQAVYRIKSGD
QDGAFSIATDPNTNDGILRTAKGLDYETRSRYDLVVTVENKVPLSVSLGLSSASVLVLVR
DVNEPPVFVPPVKRVEVSEDLPVGHEVTSYTAQDPDKDQRNKITYRMGSDPAGWLAIHPE
NGIVTAVQPLDRESVHAINSTYKAIVLAVDNGVPDATGTGTLLLHLQDVNDNGPTPEPRI
FDICSRQPEEQTLTIVDKDLPPNTYPFEAALEHGSSTNWTVKVSGQDSLVLKLHKELEPG
EYSIFLRLTDSQGKAQVTQVKAQVCECEGAAKNCERRAFIASGLGVPAILGILGGILALL
ILLLLLLLFVRRRKVVKEPLLPPEDDMRDNVYHYDEEGGGEEDQDYDLSQLHRGLDARPE
VIRNDVAPPLMAAPQYRPRPANPDEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSE
AVSLSSLNSSDSDQDQDYDYLNEWGNRFKKLAELYGGGEDDD
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggggcggcagcggggctccctggcccccctctgcttccccctgctgctgctgctccag
gtgggcggccggcggtgcgacgaggcagccccctgccagcccggcttcgccgcagagacc
ttcaccttcaccgtgccccgggacagcgtggcggcaggaggggtgctgggacgagtgagg
ttctcaggctgcggcgggcggtcgcaggccgtgtacgtcccagacgacacacgcttcgag
gtggacgaggatggcatcatccagacgaaacagccactgcagctccacgggcggaagatc
cacttcagcgtctctgccctggatgccacgggcaagaggcactcggcctgggtgactgtg
gaaaagcgcaggtggcggcaacatcaccgccacagctaccaggacggggtgccctacatg
ctcactttccctgagtccggccccggcctccgaaggcagaagagggactgggtcatcccc
cccatcagctgcctcgagaaccaccgggggcccttccccatgaagctggtgcagatcaaa
tccaacaaggacaaggagaccaaggttttctacagcatcacggggcagggggcggacagc
ccccccgtgggcgtcttcaccatcgagcgtgagacggggtggctggaggtgacgcagccg
ctggaccgcgaggagatcgggaaatatgtcctcttctcccatgcagtgtcggccaacggg
cagcccgtggaggacccgatggagatcatcatcacggtgacagaccagaacgacaacaag
cccgtcttcaccaagcaggtcttcgtcggctacatcgaggagaacgcgaagccgggcacc
tccgtgatgaccgtgaacgccacggacgcggacgacgcagtgaatgtggacaacggcatc
atcagctactccatcgtcagccaggagccgccgcgcccgcaccaccagatgttcaccatc
gacccccagaagggcgtcatcagcgtcctcggcacggggctggaccgggagaccaccccc
aactacacgctgatcgtccaggccacggaccaggagggcaaggggctgtccaccaccgcc
acggccgtcatcgaggtcacggatgccaacgacaacattcccgtcttcgaccccaacatg
tacgaggggacggtggatgagaacgaggtggggctggaggtggccaggctgcacgtgacg
gaccaggacatgccgggctccccggcctggcaagccgtctaccgcatcaagagtggagac
caggacggcgccttcagcatcgccaccgaccccaacaccaacgacggcatcctgagaacc
gccaagggcctggactacgagaccaggagccgctacgacctcgtggtgactgtggagaac
aaagtccccctctccgtgtccctcgggctctcctcggccagcgtcctggtgctcgtcagg
gatgtgaacgagccccccgtcttcgtgccccctgtcaagagggtggaggtgtcggaggac
ctgccggtggggcacgaggtcacatcctacacagcccaggaccccgacaaggatcagagg
aacaaaatcacgtaccgcatgggcagcgaccccgcggggtggctggccatccaccccgag
aacggcatcgtcacggccgtccagccgctggaccgggagtcggtgcacgccatcaacagc
acctacaaggccatcgtcctggccgtggacaacggggtgccggacgcaactggcacgggg
acgctgctgctgcacctccaggatgtgaacgacaacgggcccacgccggagccccggatc
ttcgacatctgcagccggcagcctgaggagcagacgctgaccatcgtcgacaaggacctg
cccccaaacacgtaccccttcgaggcagcgctggagcacggctccagcaccaactggacc
gtcaaggtgtccggccaagactcgctggtcctgaaactgcataaggagctggagccgggg
gagtacagcatcttcctgaggctgacggacagccagggcaaggcgcaggtgacacaagtc
aaagcccaggtgtgcgagtgtgaaggggcagccaaaaactgtgagcggagagcattcatc
gccagcggcctgggtgttcctgcaattctgggcatcctggggggcatcctggcgctgctg
atcctgctgctgctgctgctgctctttgtgaggaggaggaaggtggtgaaggagccactg
ctgccgcccgaggacgacatgcgggacaatgtctaccactacgacgaggagggtggcggc
gaggaggaccaggactatgacctgagccagctgcaccgcggcctggatgcccgccccgag
gtgatccgcaacgatgtggcccccccgctgatggcagccccccagtaccggccccggccc
gccaaccccgatgagatcggaaacttcatcgatgagaacctgaaggcggctgacacagac
cccacggcccccccctacgactccctgctggtgttcgactacgaaggcagcggttcggag
gccgtctcgctcagctccctcaactcctccgactctgaccaggaccaggactacgactac
ctcaacgaatggggcaaccgcttcaagaagctggcggagctctacggcggcggggaggat
gacgactag
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