Cygnus atratus (black swan): 118259041
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Entry
118259041 CDS
T09349
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118259041 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cata04121
]
118259041 (TRIM54)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
118259041 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
CYP38_PsbQ-like
Prok-RING_4
Zn_ribbon_FGT1_2
RHH_9
DUF5799
CagA
Motif
Other DBs
NCBI-GeneID:
118259041
NCBI-ProteinID:
XP_035424160
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All DBs
Position
3:327083..330409
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AA seq
414 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESASGPSRRP
LHAKAEQHLMCEEHEDERINIYCLRCEAPTCSLCKVFGAHKDCEVAPLPAVYQRQKSELS
DGIAMLVAGNDRIQAIITQMEEICRTIEENGRRQKQHLGLRFDSLYSILEERKKELLQSI
AREQEEKVQRVRGLIRQYGDHLEASSKLVETAIQAMEEPQMAVYLQHSKELLKKITDMSK
VSMSSRPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLGEDEGDGPTEGGEAAADEDRLD
SLEAPEAAEDVGPRQKPASSPHGETLPRTKVSTELVPRGSFSTKELIPAPGTSW
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtggggctgaagccgctgctggcggaggcgcggagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttcaccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctccaacccg
ctgtggcagtcgcggggctccagcgcggtgccgtcgggcggccggttccggtgcccgtcg
tgccgccacgaggtggtgctggaccggcacggggtgtacgggctgcagcggaacctgctg
gtggagaacatcatcgacatctacaagcaggagtcggccagcggcccctcccgcaggccc
ctgcacgccaaggcggagcagcacctgatgtgcgaggagcacgaggacgagcggatcaac
atctactgcctgcgctgcgaggcacccacctgctccctctgcaaggtctttggggcgcac
aaggactgcgaggttgcgccactgcccgcggtctaccagcgccagaagagcgagctcagc
gatggcattgccatgctggtggcggggaatgaccgcatccaggccatcatcacccagatg
gaggagatctgccggaccattgaggagaatggtcggcggcagaaacagcacctggggctg
cgcttcgactcgctgtacagcatcctggaggagcggaagaaggagctgctgcagagcatc
gcgcgggagcaggaggagaaagtgcagcgtgtgcggggcctcatccgccagtatggtgac
cacctggaggcttcctccaagctggtggagacagccatccaggccatggaggagccccag
atggccgtgtatctgcagcactccaaggagctcctgaaaaagatcacagacatgtccaag
gtgtcgatgagcagccgcccagagcctggctacgagaacatggaccacttctccatcaat
gtggactatgtggcagagatgctgaggaccatcgagttccagacagagccactgggagag
gatgagggggacggccccacggagggtggcgaggctgcggcagatgaggaccggctggac
agcctagaggcacccgaggctgctgaggatgtggggccgaggcagaagccagcaagctct
ccccatggtgagaccctccccaggaccaaggtcagcactgagctggtgccgcggggcagc
ttcagcaccaaagagctcatccctgcccctggcacctcttggtga
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