Cygnus atratus (black swan): 118259176
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Entry
118259176 CDS
T09349
Symbol
DHX58
Name
(RefSeq) ATP-dependent RNA helicase DHX58 isoform X1
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
118259176 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cata04054
]
118259176 (DHX58)
Enzymes [BR:
cata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118259176 (DHX58)
Pattern recognition receptors [BR:
cata04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
118259176 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_19
AAA_11
Hydantoinase_B
TTRAP
Motif
Other DBs
NCBI-GeneID:
118259176
NCBI-ProteinID:
XP_035424406
LinkDB
All DBs
Position
25:complement(1979891..1984682)
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AA seq
675 aa
AA seq
DB search
MELRGYQHEAVAPALRGRNSIVWLPTGAGKTRAAVHVCWKHLESRRDGRVAVLVNKVHLV
EQHAKEEFHVLQGAFRVTAISGDSSHKCFFSQVVKCSDVVICTAQILHNALLSREEDARV
ELTDFSLLVIDECHHTHKEAVYNKIMLNYLQRKLGGQRDLPQILGLTASPGTGGKTSFEG
AMEHILQICANLDTEVITSAQEHVQHLQRQVPQPKKQYDLCQERAWDPFGQRLKKIMAQI
QQHMAMAGLPQDFGTQTYEQQVMELEKRAAERFCRKTRACALHLRKYNDALLINDTVRMV
DAFQYLQQFYATERDMKDPTERFLATTFEENRTSLLALAGCQRYENPRLSKLEEILREHF
QPQGSSRGIVFTKTRQSAYSLLSWLQDAAALGGQHIRAAVLTGAGYSNQTRHMTQNEQQD
VIRQFRKGDLNLLFSTSVAEEGLDIPKCNIVVRYGLMTNEIAMVQARGRARAENSVYSVL
AKANSREVSRELLNEDLVELMERAIRAVQAMPEREYRQKIAELQRNAVIGWQVKEAKISE
RRQQHDPDDVRFYCVNCNVAVCCGSDIRTVEGMHHVNINPSFRFYYTVSLGKIHFARTFK
DWEPGCRVMCSGCSQEWGMEMIYQHVKLPILCIKNFVVETPDEKRRYKKWSSVTFPIKEF
DYLEYCSSTQEDESF
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgcgggtaccagcacgaagccgtggccccagccctgcgtggccgcaacagc
atcgtctggctgcccacgggggccggcaagacccgcgccgccgtccacgtctgctggaag
cacctggagagccggcgggacggcagggtggccgtgctggtcaacaaggtgcacctggtg
gagcagcacgccaaggaggagttccacgtcctgcagggcgccttcagggtgacggccatc
agcggggacagcagccacaagtgcttcttcagccaggtggtgaagtgcagcgacgtcgtc
atctgcacggcccagatcctgcacaacgcgctgctgagccgggaggaggacgcgcgcgtg
gagctgacggacttctccctgctggtgatagacgagtgccaccacacgcacaaggaggcc
gtctacaacaagatcatgttgaattacctccagcgcaagctcggcgggcagcgggacctg
ccgcagatcctgggcctgacggcgtcccccggcaccggggggaaaacgtccttcgagggg
gccatggagcacatcctgcagatttgcgccaacctggacaccgaggtgatcacgtcggcg
caggagcacgtgcagcacctgcagagacaagtgccccagcccaagaagcagtacgacctg
tgccaggagagagcatgggaccccttcggccagcggctgaagaagatcatggcgcagatc
cagcagcacatggcgatggcggggctgccgcaggacttcggcacgcagacctacgagcag
caggtcatggagctggagaagagagcggcggagaggttttgtcgcaagacgcgggcgtgc
gcgctgcacctgcgcaagtacaacgacgctttgctgatcaacgacacggtgcgcatggtc
gacgccttccagtacctccagcagttctacgccacggagagggacatgaaggaccccacc
gagcgcttcctggccaccacctttgaggagaacaggacaagcctgctggcgctcgctggg
tgccagcgctacgagaacccccggctgagcaagctggaggagatcctgcgggagcacttc
cagccccagggctcttctcggggcatcgtcttcaccaagacccgccagagcgcctacagc
ctactcagctggctgcaggatgcggccgcgctgggcgggcagcacatcagggcggctgtc
ctcaccggggctggctacagcaaccagaccaggcacatgacgcagaacgagcagcaggac
gtgatcaggcagttccgcaaaggagacctcaacctgctcttctccaccagcgtggccgag
gagggcctggacatccccaagtgcaacatcgtggtgcgctacgggctgatgaccaacgag
atcgctatggtgcaggcccggggccgtgcccgcgctgagaacagcgtgtactcagtgctg
gccaaagccaacagcagggaggtctcccgggagctgctcaacgaggacctggtggagctc
atggagagggccatccgggcggtgcaggccatgcccgagcgcgagtaccgccagaagatc
gcggagctgcagcgaaatgctgtcatcggctggcaagtgaaagaagccaagatcagcgag
aggcggcagcagcacgacccggacgacgttcgcttctactgcgtcaactgcaacgtggcc
gtgtgctgcggcagcgacatccgcaccgtggagggcatgcaccacgtgaatatcaacccc
agtttcaggttttattatacggtctcgttggggaaaatacacttcgcgcggacgttcaag
gactgggagcctgggtgccgtgtcatgtgcagcgggtgcagccaggagtggggaatggag
atgatctaccagcacgtcaagctgcccatcctctgcatcaaaaacttcgtggtggagacc
ccggatgagaagaggaggtacaagaagtggagcagcgtgacgttccccatcaaggagttt
gactacctggagtactgctccagcacccaggaggacgagtccttttag
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