Cygnus atratus (black swan): 118259429
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Entry
118259429 CDS
T09349
Name
(RefSeq) sodium channel protein type 1 subunit alpha
KO
K04833
voltage-gated sodium channel type I alpha
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cata04040
]
118259429
Ion channels [BR:
cata04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
118259429
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
New_glue
Lustrin_cystein
FraC
SieB
Motif
Other DBs
NCBI-GeneID:
118259429
NCBI-ProteinID:
XP_035424842
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Position
6:21012723..21079043
Genome browser
AA seq
2014 aa
AA seq
DB search
MEQPVLVPPGPDSFQYFTRESLAAIEQRIAAEKAKNSKQDRKDNDDENGPKPNSDLEAGK
TLPFIYGDIPPGMVSEPLEDMDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFC
LEDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLETNITSQLNSTI
GENGTLVNSTVAPFDWKGYIEDESHFYFLEGQNDALLCGNSSDAGQCPEGYTCVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEAAQAAAVAAAAVTASAESREPS
AAEGAGGLSESSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKEEDEFHKSESEDSIRR
KGFRLSIEGNRLTYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDIGSENDFA
DDEHSTFEDNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVV
SLVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTETEMRKRISSSFHVSMDFLEDPALRE
RAMSIASILTNTVEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVD
LAITICIVLNTLFMAMEHYPMTDEFNNVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEG
WNIFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALG
NLTLVLAIIVFIFAVVGMQLFGKNYKECVCKIASDCVLPRWHMQDFFHSFLIVFRVLCGE
WIETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNN
LQIAVARMQKGIDYVKRKAREFIQKAFVKKQKALDEIKPLEDLNNKNSCISNHTTVELSK
DHDYIKDANGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEE
FSSESDLEESKEKLNMSSSSEGSTVDIGLPAEEQPEAEPEEAMEPEACFTEGCVRRFKCC
QVSVEEGRGKQWWNLRKTCFKIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTML
EYADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAI
KSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGK
FYYCVNTTTDERFEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFK
GWMDIMYAAIDSRDVLQQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKK
FGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQAFDISIMILIC
LNMVTMMVETDDQSKEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVV
ILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFN
IGLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAP
ILNSGEPDCDPNKAHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFGVA
TEESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSDFAAALDPPLHLPKPNKVQLIAM
DLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMASNPSKASYEPITTTLKR
KQEEVSAVIIQRAYRRHLLKRTVKQASFIYNKNKMEGGAGQGMKDEILIDKLNENSFTEK
TDITASTAVCPPSYDRVTRLVKEKHEKEDKDVQK
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atggagcagccagtgcttgtaccaccaggaccagacagcttccaatacttcactagagag
tctcttgcagctattgaacaacgtattgctgcagaaaaagctaagaattccaaacaagat
cgtaaagacaatgatgatgaaaatgggccaaagccaaacagtgatttggaggcaggaaaa
acacttccgtttatatatggcgacatacctccaggaatggtgtcggagcccttggaagac
atggacccatattatatcaataaaaaaacctttatagtattgaataaagggaaggcaatc
ttccgattcagtgccacctctgccctgtacattttaactcccttcaatcctcttagaaaa
atagctattaaaattttggtacattcattattcagcatgcttatcatgtgcactattttg
accaactgtgtatttatgaccatgagtaaccctccggactggacaaagaatgtggagtat
acgttcactggaatatacacgtttgagtcactcataaaaatcattgcaaggggcttttgc
ttagaagattttacttttcttcgagatccatggaactggctcgatttcactgtcattacc
tttgcatatgtgacagaatttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagctttgaaaacaatatcagtcattccaggcttgaagactatcgtgggagcc
ctaattcagtctgtgaagaagctctcagatgttatgatcctgactgtgttttgtctgagt
gtatttgcactaatagggctgcagctgttcatgggcaacttgaggaataaatgcctgcag
tggcctccagaaaattttactctggaaacaaatattacttcccagctcaacagcaccatt
ggtgaaaatggtacactggttaattcaacagtggctccatttgactggaaggggtacatt
gaggatgaaagtcatttttattttctggaagggcaaaatgatgctctgctttgtggaaat
agctctgatgctgggcagtgcccagaagggtatacatgcgtgaaagctggtagaaacccc
aattatggctacacaagttttgacaccttcagctgggctttcttgtcactgtttcgcctg
atgacccaagacttctgggaaaacctttatcaactgactctacgtgctgctgggaaaaca
tacatgatattttttgttctggtgatttttctgggctcgttctatctgattaatttgatt
ctggctgtggttgccatggcctatgaagagcagaatcaagcaaccatggaagaagcagaa
cagaaagaggcagaatttcaacagatgctggaacagctgaagaagcaacaagaagcggct
caggcagcagcagtggcagcagcagcagtaacagcatccgccgagtccagggagcccagt
gctgcagaaggagctggtgggctctcagaaagttcctcagaggcatccaaattgagctca
aagagtgcaaaagagagaagaaatagacggaaaaaaagaaaacagaaagaacagtctgga
ggagaggaaaaagaagaagatgaatttcacaagtctgaatcggaagacagcataagaagg
aaaggtttccgattatctattgaaggcaatagactgacatatgaaaagaaatactcttct
ccacatcagtctttgctgagcattcgaggctccctgttttctccaaggcgcaacagcaga
acaagtcttttcagcttcagaggtagagcaaaggatataggatcagaaaatgactttgct
gatgatgagcacagcacttttgaagacaatgatagcagaagagattctctctttgtgccg
cgcagacacggtgaacggcgcaacagtaacattagtcaggccagtaggtcatccaggatg
ctggcagtgtttccagtgaatgggaagatgcacagcactgtggattgcaatggggtggtt
tccctggttggcggaccatctgttcctacatcgcctgttggacagcttctgccagaggtg
ataatagataaaccagctactgatgacaatggcaccactacagaaactgaaatgaggaaa
agaatatcaagctctttccatgtttctatggactttctggaagatccagctttaagagaa
agagcaatgagcattgctagcatccttacaaacacagtggaagaacttgaagaatcaagg
cagaaatgcccaccatgttggtataaatttgcaaatattttcttgatctgggactgcagt
ccgcattggttaaaagtaaagcatatcgtcaacttagtggtaatggatccatttgttgac
ttggcgattactatttgcattgttttaaatacactttttatggccatggagcattatccg
atgactgatgaattcaataatgtactttcagttggaaatctggtcttcactggaatcttc
acagcagaaatgtttctcaagataattgcaatggatccttactattatttccaggaaggc
tggaatatttttgatggttttattgtaacccttagcttggttgaacttggtcttgcagat
gtggaaggactctcagttcttcgatcattcagattgttacgagttttcaaattagcaaaa
tcttggccaacactaaatatgctaataaaaattattggtaactctgtgggagctctggga
aatttgaccctggtgctggccatcattgtgttcatttttgctgtggttgggatgcagctg
tttgggaaaaactacaaggaatgtgtctgcaaaatcgcaagtgactgtgtacttccacgc
tggcacatgcaagatttttttcactcttttttgattgtatttcgagtattgtgtggggaa
tggatagaaacgatgtgggactgcatggaggttgctggccaagccatgtgccttactgtc
ttcatgatggtcatggtgattggaaacctagtggtactgaacttatttttggccttgcta
ttgagctcttttagtgcagacaaccttgctgtgacagatgatgataatgaaatgaataat
ctccaaattgctgttgcaagaatgcagaagggcatagattacgtgaaaagaaaagcacgt
gaattcatccaaaaagcttttgttaaaaaacaaaaagctttagatgaaatcaaaccactt
gaagatttgaacaacaaaaatagttgtatttccaaccatacaactgtcgaactaagcaag
gaccatgactatattaaagatgcaaatggaacaactagtggcataggcacaggcagcagt
gtggaaaaatacataattgatgaaagtgattatatgtcattcataaacaacccaagcctg
actgtgacagtgcccattgctgtgggtgaatctgactttgaaaatttaaatacagaggaa
tttagtagtgaatcagacctggaagaaagcaaagagaagctaaacatgtccagttcatct
gaaggtagcacagttgacattggactccctgcagaagagcaaccagaagctgaacctgag
gaagccatggaaccagaggcttgcttcactgaaggttgtgtacggcgtttcaagtgctgt
caagtaagtgtagaagaagggagaggaaagcagtggtggaaccttagaaaaacctgcttc
aagattgttgagcacaactggtttgagactttcattgtctttatgattctcctcagtagt
ggagctctggcttttgaagatatatatattgaacagcgtaaaactatcaagaccatgctg
gaatatgctgataaggtcttcacttacatcttcattctggaaatgctgctgaagtgggtg
gcctatggctatcaaacatactttactaatgcttggtgctggctggacttcctgatcgtt
gatgtctctttggttagcttaacagcaaatgcattgggttactctgaacttggtgccatt
aagtcccttaggacactaagagctttgagacctctaagagctttgtcacgatttgaaggc
atgagggtggttgtgaatgcccttttaggagcaattccatccatcatgaacgtgcttctc
gtttgtcttatattctggctaattttcagcatcatgggagtaaatctgtttgctgggaag
ttctactactgtgttaacaccacaactgatgaaaggtttgaagtcgaccaaatcaacaat
tttagtcagtgcgaggaactcataaaaaacaatcaaagtgcccgatggaaaaacgtgaaa
gtaaactttgataatgtaggatttgggtatctttctttacttcaagtagctacatttaaa
ggctggatggatattatgtatgcagctattgactcaagagatgtattacagcaacccaag
tatgaagacaacctgtacatgtatttatattttgtcatctttatcatctttgggtcattt
ttcacgctgaacctgttcattggtgtcattattgataacttcaatcagcaaaaaaagaag
tttggaggtcaagacatatttatgacagaagagcagaagaaatactacaatgcaatgaaa
aagttgggatccaaaaaaccgcaaaaacctataccaagaccagggaacaaattccaaggc
atggtctttgattttgtgacacaacaagcatttgacatcagcatcatgattcttatctgt
cttaacatggttaccatgatggtagaaactgatgaccagagtaaagaaatggaaaatatt
ttatactggataaacctggtgttcattgtccttttcactggagaatgtgtcctgaaatta
atttcactccgacattattatttcactataggctggaacatttttgattttgtagttgtc
attctctcaatagtaggtatgtttttagctgagatgattgaaaagtattttgtgtccccc
acattattccgagtcatccgacttgccagaataggtcgaatcctgcgtctcattaaaggc
gctaagggaatccgcactctgctctttgctttgatgatgtctcttcctgctttgttcaac
attggtctactgctgttcctggtcatgtttatctatgcgatatttggcatgtccaacttt
gcctacgttaagagggaagctgggattgatgacatgttcaactttgaaacgtttggcaac
agcatgatctgcctatttcaaatcaccacatctgctggctgggatggtttgttagcccca
attctgaacagtggggagccagactgtgacccaaacaaagctcatccggggagctctgtt
aaaggcgactgcggcaacccttccgttgggattttcttctttgtcagctacatcatcata
tcctttctggtagtggtgaacatgtacattgctgtgattctggagaactttggtgttgcc
actgaagaaagtgctgagcccctgagcgaggatgactttgagatgttctatgaagtctgg
gagaagtttgatccagatgcaacacaatttatggaatttgagaaactgtctgattttgca
gcagcacttgatccacctcttcacctacccaaaccaaacaaagtccagcttattgcaatg
gatctgcccatggtaagcggagacagaattcactgccttgacatcttgtttgctttcaca
aagcgtgtcctgggggaaagtggggaaatggatgccctcagaatacaaatggaagaccga
tttatggcatcaaacccttcaaaagcttcctatgaaccaattacaacaacattaaaaaga
aaacaagaagaagtatctgctgtcattattcagcgtgcttacagacgtcaccttttaaaa
cgaacagtaaaacaagcttcctttatctataacaaaaacaaaatggaaggaggagctggt
cagggtatgaaagatgaaatccttattgataagttaaatgaaaactcatttacagagaaa
actgatataaccgcatcaacggcagtttgtccaccttcttatgatcgtgtaacaaggcta
gtcaaagaaaagcatgaaaaggaagacaaggatgttcaaaaataa
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