Cygnus atratus (black swan): 118259439
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Entry
118259439 CDS
T09349
Symbol
SPG11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cata03400
]
118259439 (SPG11)
DNA repair and recombination proteins [BR:
cata03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
118259439 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Kbp-5
Motif
Other DBs
NCBI-GeneID:
118259439
NCBI-ProteinID:
XP_035424854
LinkDB
All DBs
Position
11:21273555..21311065
Genome browser
AA seq
2355 aa
AA seq
DB search
MWENTEDYDLQTDKPKILALSKNHELFVYEFTMEDGKYDPISLHSCKEDMLKKLLEVKNI
SLSSILSLRILSFKDNRCLLLLNNLIVVHLTFPGEDSSLETCDCVNLDLPPQVLERITDI
NFCRGILFFLDSSGWIYIFDSFDGANLANIDVALCQGGVQDENRSSAMTPPLTAVKVSYD
LSVAVIINSSNSAISVDLNKYFRQFPGHLICKRDSESLPVKPPEGLDEDDLASSDYSMEL
MSPSFRVDRSWKAHLSSLRNTIRKRRPRSPNLAYDTNLPWFQYFTHLEDHDPLIYETAEK
VLAVVPKAVWCVPSKPLQSSGTNLSDSRQHWKQICVEVPQEVVKLECKSVTGAKALFVIL
TNDERLTLALWDFESQDVTYYHFSKDTVYVDCNEDVPLCLLLTEHGLSLILFGLTQEEFL
NRLMIYGSAGVVDSVCHLNGWGRCSIPIHALEAGLENRQLDTVDLFLKSKESLFNLSAPC
SGPEQSTDSASQSFLKNLEELRPALNLLGSAIRENDMEPQSKHFSEQLLNLTLTFLSKQL
EEIFVHTEEPDEYLQKAADTLTDYIIELRTFMKNYPRPQINIADVGSDLDEELPAVEESQ
MWEKLTPEEVIAEAILSNKMPEAQTFFRMHQHPAQSLQEFIQTGLNLVYDRLLKNNTREA
SELLRNMGFDVKQQLHKICFYTVDKHVRDLLVKVLQEENYFSEKEKKMIDFVHQVESFYS
ESFQENKEIQSLSSLKNWRKEQDFSRHTAALDLLNCEGHRVHNREVRVMFNWAQWWDEPI
QEMILLPKKARQELPACNPEVLWMHLTAQHDWLNICSWIEESEPNETLCGQANWPTLTAD
IVDRNTLCSGYMRNDILNKLARNGIFVLSELEDFELLLQRLVYLGGVLQNPHPVPKYCAA
SGLDFHAHFVLHCLEHNLQYMLYTYLDYYSLTPSNCPILDNKELHEAHPWFEFLVQCRGV
ASNPRDPKMIFQASLANAQILIPSNQASVSSMLLEGRTLLALATTMYAPGGIDQVLRNED
MEKPLKKVDPQLLKMALSPYPKLKAALFPPCTSRGILPPDISLYHLVQTLVPFDPTKLFG
WQSTNTLALSDTSSEFPHFSSPELVNKYAIMERLDFLYYLQHGRPAFAFGTFLVQQLVKS
KSPKQLIQQAGNEAYILGLSFFNIPSVGAACVCFLELLGLNSLKLRVDIKVANMIFSYKT
RNEESRHNEIRESLVEKLTKLADGEKAATEEVLISLEEAFWDEIEHQGIKKTSSDSRRQW
SLVMQFCKLHNTRLSTSYLKECAKSNDWLQFIIQTQLYSYKPDEVISILHGFTPILQDHL
MLALEKVPFSCADAGGPENSAASMFKSKNVGSLFQILFRCQENSNPSRYLLTEGLREHAP
ILSVLAACFQDANIIHCLCVWIITTVDNVTRSEATNHIQTSVENHIWDLHDLSLIWKVFL
RNQKSKTLIKGFQLFLKDSPLLHILEMYELCMNCKKYNEAKSKLDKFQEQLTKLKTSDEP
AASELPVQWLESQALFLLELMMQQCRTEYELGKLLQLFAATDNLLDGPYVKKLCALIETL
KDSSVSINRSILTSYDTETFQNECRSILEQLQEKGMFSLAREVAELAELPVDHVVTQEVL
RDLHLLRDIGEWQLKQTRIKFWKKCNDNFMKNSISSKAASDFFLNQANTVYESSVHEKIN
SIMERHLLLTLAGHWLAKNESVSLEKLEEIEKQIWICRITQQTLSAGEGSGKSRLSFHGI
VNMDLTFDNLAKEFSFSKLPALNTPNYLKPEGLEFRESEQTLTNDEKESLKFLIGCLLDE
GSVHEASRVCRYFHFYDRDVSLVLHCRALASGETGLDKLHADIQTLLVVIEKMYENSASQ
QTRIPSTSSLEDWTHVVAPSPDDQVVVSLKALIDECVHGRNYCRQVLCLYELSKELNCSY
SEMSAHDPEEVLRAILSSHQPDRCRKAQAFITTQGLQPEIVAELVAEEITQELLASSEGK
GQKQVLNPAAESQAFLQLAKLCQDHTLVGMKLLDKISSVPRGELSCITELLILAHNCFSL
TCHMEGITRVLQAARLLTDEHLAPNDEYGLVVRLLTGIGRYNEMTYIFELLHEKHYFEVL
MRKKLDPSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAAGIQLKLIES
QPWEESLQDVANLKKLLMKALTLFIDAAESYSKDSCVRQSLRCSRLTKLITLQLHFLNTG
QSTMLINLNRQNLMECIMSLPRFYQAAIVAEAYEFVPDWAEVLYQQVITKGDFNYLEEFK
QQKLLKPSIFEEIAKKVKQHPPTDAALKNLKKLLAYCEDIYMHYRLAYDNKFYDVVNMLL
KDAQTGCCLNDMLSN
NT seq
7068 nt
NT seq
+upstream
nt +downstream
nt
atgtgggagaatacagaagattatgatctacaaacagacaagccaaaaatactggctctt
agtaaaaatcacgaactgttcgtctatgaattcactatggaagatggaaaatatgaccca
atttccctgcacagttgtaaggaagacatgcttaaaaagctcctcgaagttaaaaatatt
agtctttcttcaatattgtctttgaggatactgtcttttaaagacaacagatgcctgctt
ctgctcaataacttaattgttgtgcatcttacctttcctggagaagattcgtcattagag
acatgtgattgcgttaaccttgatttgccaccgcaagttttggaaagaataacagatata
aacttctgcaggggaattctgttttttttagacagttctggctggatttacatatttgat
tcttttgatggtgcaaatctagcaaacattgatgtagcactctgccagggaggtgtgcag
gatgagaacaggagttcagccatgacaccaccactcactgcagtaaaagtgtcatatgat
ctcagtgttgctgtgatcatcaattcttccaacagtgccatttctgtggatctaaacaag
tacttcagacaattccctgggcatttgatctgtaaaagagattctgaaagtcttccagtg
aagccacctgaaggtcttgatgaggatgaccttgctagttctgactacagtatggagctt
atgtcaccgtctttccgtgtggacaggtcctggaaggcacacttatcctcactacgcaat
acaatcaggaagagaagaccacgttctccaaatttggcgtatgacacgaatttaccttgg
tttcagtattttacccatcttgaagatcatgatcccttaatctatgaaactgctgagaag
gtgctggctgttgttccaaaggctgtttggtgtgtcccttccaaacccttacaaagcagt
ggtacaaatctcagtgattcaaggcagcactggaaacagatctgtgtagaagtaccacaa
gaagtggtgaaactggagtgtaaatctgtaactggagctaaagcactgtttgtaatatta
acaaatgatgaaagattgactcttgctctctgggatttcgagtcacaagatgtgacttat
taccacttcagcaaagatactgtttatgtggattgtaacgaagacgtgccgttatgtctg
cttctgacagagcatggtctttccttaattctgtttggtttaactcaagaagagtttttg
aatagattgatgatctatggcagtgctggagtcgtagattctgtttgtcatctcaatgga
tggggacgatgttcgattccaatacatgcgctagaggctggtttggaaaatcgtcaacta
gacacagtagacttgtttttaaaaagcaaagaaagtctttttaatctttctgcaccctgc
tctggacctgaacagtctactgatagtgcgtctcagtcttttctgaaaaatttggaagag
ctgaggccagctttaaacttacttggctcagcaatcagagaaaatgatatggagcctcag
agtaaacacttttctgagcagctgctaaacctcacgttgactttccttagcaagcaactt
gaagaaatttttgtccacacagaggaacctgatgaatacttgcagaaggctgcagatact
ttaactgattacattattgaacttaggacatttatgaaaaattaccctcggccacaaata
aatattgcagatgtaggaagtgatcttgatgaagagctacctgcagtagaagaaagccaa
atgtgggaaaaactgacaccagaggaagtcattgctgaggccatcttaagcaacaaaatg
ccagaggcccagaccttcttccgaatgcatcagcatcctgctcaaagccttcaggaattt
attcagacaggtttgaatctggtctatgaccgtcttctgaagaacaataccagagaggcc
tcggaacttttaagaaatatgggctttgatgtgaagcagcaattgcataagatatgtttc
tacacagttgataaacatgtacgagatttgttggtgaaagttttacaagaagaaaattat
ttttctgaaaaagagaagaaaatgatagactttgtgcatcaggttgaaagcttttactcg
gagtccttccaagaaaataaagagattcagtctctttccagtttaaagaattggagaaag
gagcaagacttttccagacatacagccgctctagacttgttgaattgtgaaggacatcgg
gttcacaatagggaagtcagagtgatgtttaactgggcccaatggtgggatgagcccatt
caggaaatgattcttctacctaaaaaagcacgccaagaacttcccgcctgtaatcctgag
gttctttggatgcacttgacagcccagcatgactggcttaatatttgttcatggattgaa
gaatctgagcccaacgagactttgtgtggacaggctaactggcccactctgactgcagac
attgttgaccgaaatacgttgtgtagtggctacatgagaaatgatatattaaacaagctg
gctagaaacggcatttttgtcctttctgagttggaagattttgagcttctgctccaaaga
ctggtttacctagggggcgtactgcaaaatcctcaccctgttccgaaatactgtgctgca
agtggtttggacttccacgctcattttgtccttcactgtttagaacataatttgcagtat
atgttgtacacttacctagattactacagtttgaccccttcaaattgccctattttggat
aacaaggaattgcatgaagcacatccctggtttgaatttctcgtgcagtgtcgaggggtt
gccagtaacccacgagatccaaagatgatttttcaagctagtcttgcaaatgctcagatc
ttgattcctagtaatcaagccagtgtgagtagcatgctactggaaggacgtacgctatta
gcacttgctaccacaatgtatgcacctggaggtattgatcaggttcttcggaatgaagat
atggaaaaacctctaaagaaagttgatccacagctcttaaaaatggcattaagtccttac
cccaagctcaaagctgctctctttcccccatgtacttctcgtggaattttgccacctgac
atctctctttaccatcttgttcagacattagtgccttttgatccaactaaattatttggc
tggcagtcaacaaatactcttgctctatcagatacatcaagtgagtttcctcatttttca
tcccctgaactggtgaacaaatatgccataatggaacgactggattttttgtactatttg
cagcacggacgtccagcatttgcttttggtacatttttggtccagcagttagtaaagagc
aaatcccccaaacagctgattcagcaagcaggaaatgaagcctatattttaggcctttct
ttcttcaacataccttcagtaggagcagcctgtgtttgttttctggaactgcttggtctc
aacagcctcaaactgagagtcgacattaaagttgcaaacatgatattcagttacaaaacc
agaaatgaagaatctcggcacaatgaaataagagaatctttggttgaaaagttaacaaag
ttggctgatggtgaaaaagcagcaacagaggaagttcttatctccttagaagaagccttc
tgggatgaaattgaacatcaaggaataaagaagacgtctagtgactctagaaggcagtgg
tctttggtaatgcagttctgcaaactccataacacgagactgagtacatcgtacctaaag
gaatgtgctaaatccaacgactggctgcagttcatcatccaaacccagctgtacagctac
aagccagatgaggtcatttctatccttcacggattcactcccattttacaagatcacttg
atgttggcattggagaaggtaccgttttcatgtgctgatgcagggggtcctgaaaacagt
gctgccagtatgttcaagagcaaaaatgtgggtagtctctttcaaatcctttttcgatgt
caagagaactccaacccttcacgttaccttttgactgaaggactgagagagcatgctccc
attctgagtgttttagcagcatgtttccaagatgccaacattattcattgtctttgtgtc
tggataattactactgtggataatgttaccagatctgaagcaacaaaccatattcagaca
tcagtagaaaatcacatatgggatctccatgacctatcacttatctggaaagtgttttta
aggaatcaaaaaagtaaaacacttataaagggcttccagctatttttaaaggattcccct
ttactgcatatactggagatgtatgaactgtgtatgaactgtaaaaaatacaatgaagct
aaaagcaaactggacaagtttcaggaacagctcacaaaacttaaaacttcagacgaacca
gcagcttcagaattacctgtgcaatggctggaatcacaagcattgtttcttcttgaattg
atgatgcagcaatgtagaacagaatatgaattaggaaagctcttacagctgtttgctgca
acagataatctactcgatggcccttatgtgaagaaactctgcgcactcattgaaaccctg
aaggattcctccgtatcaattaatcgctccatcctaaccagttacgatacagagacattt
cagaatgagtgcagatcaattttggagcagctacaagagaaaggaatgttctcactggct
cgggaggtagcagaattagctgaattgcctgtggatcatgtagttacccaagaggttcta
agagatctacatcttttaagagacattggagagtggcaactaaaacagacaagaattaaa
ttctggaaaaaatgtaatgataacttcatgaaaaattcaatctccagcaaagctgcatct
gatttttttttgaatcaggcaaacacagtgtatgaatcatcagttcatgagaagataaat
agcattatggagagacatctgttgcttaccttagctggccattggctagccaagaatgag
tcagtgtcactggagaaattagaagaaatagagaagcagatctggatttgtcgcatcaca
caacaaacgttatccgcaggtgaagggtcaggcaagtcaagactttccttccatggcata
gtgaatatggatcttacctttgataacttagctaaggagttttctttttcaaagctacct
gctctgaacacaccaaactacttaaaaccagagggtcttgaattcagagagtctgaacag
accttgactaatgatgagaaagaatcactcaagtttttgattggatgccttcttgatgaa
ggaagtgtacatgaagccagccgtgtttgtcgatatttccatttctacgacagagatgtt
tcactggtattgcattgcagagctctggcctcaggggagactggtctagacaaattacac
gcagatattcagactctccttgtagtgatagagaagatgtatgaaaacagtgcatcgcag
caaaccagaatcccaagcacatcaagcttagaagactggacacacgttgttgctccatct
ccagatgatcaggttgttgtcagtctgaaggctctcatagacgaatgtgttcatgggaga
aactactgcagacaggttctctgcttatatgaactttctaaggaattgaactgctcctac
agtgaaatgtcagcccatgaccctgaagaagtgcttcgagcaattctgtcatcccaccag
ccggacagatgcaggaaagctcaggcattcatcaccacgcagggtctccagcctgaaatt
gtggcagagttagtggctgaagaaatcacacaagaattattggcatcttctgaaggcaaa
ggacagaaacaagttttgaaccccgcagctgagagtcaggcattcctacagcttgctaag
ctctgccaggatcacacactggttggcatgaagttactggataaaatttcctctgtacca
cgtggggaactgtcgtgcattacagaattgctgattttggcccataattgctttagtttg
acttgccacatggaaggaatcactagagtcctccaagcagcacggcttctcacagatgaa
catttagcacctaatgatgagtatggacttgtggttcgtcttcttactggaattggcaga
tacaatgaaatgacctacatatttgaactgctgcatgagaaacattactttgaagtgctc
atgagaaagaaattagacccaagtgggacactgaagacagctctgctggattacatcaag
cgttgccgcccaggggacagtgaaaagcacaacatgatcgccctttgcttcagtatgtgt
cgagaaattggagagaatcatgaggctgctgctggcatacagcttaaactcattgaatcg
cagccatgggaggagtctcttcaagatgttgcaaatttaaagaaactgctgatgaaagct
ctgactctctttattgatgcagcagaaagttactctaaggactcctgtgtccgacagtcc
ttgcgctgcagtcggctaacaaagctgataaccctccagctgcattttctgaacaccggt
cagagcactatgctgattaacctgaacaggcagaacctgatggaatgcatcatgtccttg
cctagattctatcaagcagctattgtggccgaggcttacgagtttgttccagactgggct
gaagttctgtatcaacaagtgatcaccaagggagacttcaattacttagaagaatttaaa
cagcaaaaactactgaagcctagcatatttgaggagattgctaagaaggttaaacaacac
ccaccgactgatgctgctctgaaaaatctgaagaaattgcttgcttactgtgaagacatc
tacatgcactacagactggcttatgataacaagttctatgatgtggtaaacatgctcctg
aaagatgcacagactggatgttgtcttaacgacatgctatcaaactag
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integrated database retrieval system
