Cygnus atratus (black swan): 118259581
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Entry
118259581 CDS
T09349
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cata03016
]
118259581 (RTCB)
Enzymes [BR:
cata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
118259581 (RTCB)
Transfer RNA biogenesis [BR:
cata03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118259581 (RTCB)
Prokaryotic type
tRNA splicing ligases
118259581 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
118259581
NCBI-ProteinID:
XP_035425119
LinkDB
All DBs
Position
1:57185871..57197599
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKLDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgacgagctgcagttcctggacaagctggacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcacgtggagggtgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaacgcctgccgtggcgggggtgcgggt
gggtttttgcctgctatgaagcagattgggaacgtggcagcgttacctggcatcgttcac
agatcaataggcctgccagatgtccattcgggctatgggtttgccattggcaacatggct
gcctttgacatgaatgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttgctgcgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaagctatgtttgaccatattcctgttggtgtcggctccaagggtgtc
atccccatgaatgccaaggatttggaagaggcactagagatgggtgtggactggtctctg
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgctg
caggccgatcccaacaaggtctcctcaagggcgaagaaaaggggcctgcctcagctgggg
accctgggagcaggaaatcattacgccgagatccaggtcgtggatgacatttacaacgaa
tacgctgcccggaagatgggcatcgaccacaaagggcaggtgtgcgtcatgatccacagt
ggcagcaggggtttgggccaccaggttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcggcaactagcatgcgccaggattgcctct
gcagaggggcaggattacttgaaaggaatggcagctgctggaaactatgcgtgggtcaac
cgctcttctatgacttttctaacgagacaggcctttgccaaagtcttcaacacaacccca
gatgacctcgatatgcacgttatctatgacgtgtctcacaacattgccaaagtggagcaa
cacgtggtggatgggaaggagcgaactctgttggtgcacagaaaagggtcaaccagagcc
ttccctcctcaccatcctcttattgctgttgattatcaactgaccggacagcctgttttg
atcggtgggaccatgggcacctgtagctacgttcttacgggcacagagcaaggcatgact
gagaccttcggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgacagat
gtggttaatacctgccatgcggctggcatcagcaagaaagccattaaattgagacctatt
gctgttataaaaggctag
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