Cygnus atratus (black swan): 118260147
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Entry
118260147 CDS
T09349
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
118260147 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cata01002
]
118260147 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cata00536
]
118260147 (SHH)
Peptidases and inhibitors [BR:
cata01002
]
Cysteine peptidases
Family C46: hedgehog family
118260147 (SHH)
Glycosaminoglycan binding proteins [BR:
cata00536
]
Heparan sulfate / Heparin
Morphogens
118260147 (SHH)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
VldE
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
118260147
NCBI-ProteinID:
XP_035426098
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Position
2:complement(8906633..8915908)
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AA seq
425 aa
AA seq
DB search
MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEHGGTKLVKDLSPGDRVLAADAEGRLLYSD
FLAFLDREDSSRKLFYVIETRQPRARLLLTAAHLLFVAPQHNQSQVLGPAGGRALYASRV
RPGQRVYVLGEGGRQLLPAAVHRVTLREEASGAYAPLTAQGTILINRVLASCYAVIEEHG
WAHWAFAPFRLLQGLLAAICPGGDAPVTATTTTGVHWYSRLLYRIGSWVLDGDALHPLGM
VAPAS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcagcgctgcaaggacaagctgaacgccctggcgatctcggtgatgaaccagtgg
cccggggtgaagctgcgggtgaccgagggctgggacgaggacggccaccactccgaggag
tcgctgcactacgaggggagagccgtggacatcaccacgtcggatcgggaccgcagcaag
tacggcatgctggcccgcctcgccgtcgaggccggcttcgactgggtgtactacgagtcc
aaggcgcacatccactgctccgtcaaagcagaaaactcggtggcggccaaatccgggggc
tgcttccccggctcagccacagtgcacctggagcacggcggcaccaagctggtgaaggac
ctgagccccggggaccgcgtgctggcagccgacgccgagggccggctgctctacagcgac
ttcctcgccttcctcgaccgcgaggacagttcccgcaagctcttctacgtcatcgagacg
cggcagccccgggcccggctgctgctgacggcggcccacctgctcttcgtggccccccag
cacaaccagtcgcaggttttggggcccgccggaggccgtgccctctacgccagccgcgtg
aggccgggccagcgcgtctatgtgctgggcgagggcgggcggcagctgctgccggcggcc
gtgcaccgcgtcacgctgagggaggaggcgtcgggggcctacgccccgcttaccgcccag
ggcaccatcctcatcaaccgggtgctggcctcctgctacgccgtcatcgaggagcacggc
tgggcccactgggccttcgcgcctttccgcttgctccaggggctgctggccgccatctgc
cctggcggggacgcccccgtcaccgccaccaccaccaccggcgtgcactggtactcgcgg
ctcctctaccgcatcggcagctgggtgctggatggcgacgcgctgcacccgctgggcatg
gtggcgccggccagctga
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