Cygnus atratus (black swan): 118260372
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Entry
118260372 CDS
T09349
Symbol
TNRC6C
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cata
Cygnus atratus (black swan)
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118260372 (TNRC6C)
03036 Chromosome and associated proteins [BR:
cata03036
]
118260372 (TNRC6C)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118260372 (TNRC6C)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118260372 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
DUF4718
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
118260372
NCBI-ProteinID:
XP_050570313
LinkDB
All DBs
Position
18:4427486..4723434
Genome browser
AA seq
1982 aa
AA seq
DB search
MEASGGEFKSKDNRDLDDRQKQRINHQTGPYQKTAFEGVKSREKEQETQEEEHLMEEKKK
KKQEEKKKKEGAQKKAAEQKTKVPEPIKTSLSQPQPAGTGTSTSTSTITNSSNGKRASAN
GQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPPGTLTGTSPAQGTGQAGASPPPQQGA
GGQHHPSKTQADLSHSGLGDHYENSHWGQQPTFRSEGNCSWDKVIIDRTDKEAWPSITGA
ETESASECTTDTDSASNCGSENSSMATGSAQGNFTGHTKKTNGNNGANGALVQSTSNQSA
LGAGGANGNGNSARVWGVAAGSSSGLAHCSASGGDGKMDNMIGDGRSQNCWGASNSNAGI
NLNLNPNANPAAWPVLGHEGTVGAGNPSSICSPVSAIGQNMGNQNGNPTGTLGAWGNLLP
QESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPINAMQTNGLPNWGMAVGMGA
IIPPHLQGLPGANGTSVSQVSGGSGEGMGSSVWGMSPGNPATGNSNSGFSQGNGDTVNSA
LSAKQNGSSSAVQKEGNGASAWDSGPPSGPGVLAWGRGGGNSGVGSMHSGAWGHPNRNAS
NGVNGEWGKPPNQHSNSDINGKGSTGWDGSSVTSPNPAMQQGNEQMNSWAKAAASGTTAS
EGSNDSGGSQNEGSTGREGAGEGRRRDKGMIDQGQVQLPRNDLDPRVLSNTGWGQTPVKQ
NTAWEFEESPRSERKNDNGTEAWGCAATQSSNSGGKNDGSIMNSTNTSSVSGWVNSPPAA
VPTNTGWGDNNNKAPNGPGGWGESASSTTVNNAAAAKSGHAWSGTANQEDKSPTWGEPQK
PKTQNWGDGQKSNPSWTSGGGDWTDSSSVPGHLGDGKKNGSGWDSDNRSGSGWNDSTRSG
TSGWGNGTNSKANTGTSWGESLKPGPQQNWANKPQDNNVSNWGGAASVKQTGSGWVGGPV
PAKQKENCEATGWEEPSPPSIRRKMEIDDGTSAWGDPNYNNNKTVNMWDRNNPIIQSSTT
TNTTTTSTIINTNMVEPQPSHQSSAQPNRSPLLGPAGWGEMPNVHTKTEASWGEPSSPSA
AVDNGTSAWGKPPSSGTGWGDNPAESAGTYGRTNAPAAAPALCKPASKSMQEGWGSGGDE
VNLSTSQWEDEEGDMWNNTASQESSSSCNSWGNAPKKGLQKGMKTSSKQDEAWIMNRLIK
QLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVEMDKRGMGVTDYNGMVTKPLGCRPP
PISKESSMDRPTFLDKDGGLVEEPTTSPFLPSPSLKLPLSNSALPNQTLGGIASGLGMQN
LNSSRQIPSGNLGMFGNSGAAQARTMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQL
LQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQ
EQQVARTINNMQQQIQQHQRQLAQALLMKQQPPPPHLSLHPSAGKSAMDSFSPHPQAPGL
PDLQTKEQQSSPNTFAPYPLAGLNPNMNVNNMDITGGLSVKDTSQSQSRLPQWTHPNSMD
NLSSAASSLDQNSSKHGAIPGGLSIGPPGKSSIDDSYGRYDLIQNSESPASPPVAVPHSW
SRAKXDSDKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDV
NRYLLKSGGSSPTSSQNATLPSSSAWPLSASGYSSSFSSIASAPSIAGKLSDIKSTWSSG
PISHTQASLSHELWKVPRNTTAPTRPPPGLTNTKPSSTWGASPLGWTSSYSSGSAWSTDS
SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKS
LHMCVLGNTTILAEFAGEEEVNRFLAQGQPLPPTSSWQSNTGSNQTRLGSAGGSHGLVRG
DAGHWNSPCLGGKGSSDLLWGGVPQYSSSLWGPPSTDDGRVIGSPTPLNTLLPGDLLSGE
SI
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atggaagcttctggcggtgaatttaaatccaaagacaatcgagatctcgatgacagacag
aagcaaagaataaaccaccagacaggcccttaccagaaaacagcttttgaaggagtcaag
agcagggagaaagaacaagaaacacaagaagaggaacatttgatggaagaaaagaaaaag
aaaaagcaggaagaaaagaaaaagaaggaaggtgctcagaaaaaggctgctgaacaaaaa
accaaagtgccagaacctattaagaccagtttaagccagccccaacctgccggtaccggt
accagtacttccaccagcactattaccaacagcagcaatggcaagcgtgcatctgctaat
gggcagcagccagctgcgtcccgttacctgcctcgcgaggtgcctccacgcttccgccag
caagaacagaagcagctcttaaagagagggcagccactgcctcctgggactctgactggc
accagcccagcgcaaggtaccggacaagcaggggcgagtcctcctccgcagcaaggagcg
ggaggacagcatcatcccagtaagacccaagcagatctcagtcacagtggattgggagac
cattatgaaaattcccactggggacagcagcccactttcaggagtgaaggcaactgcagc
tgggataaagtgataatagacaggactgacaaggaagcgtggccttccatcacaggagct
gagactgaatctgcctcagaatgtactacagacactgactctgcctccaactgtggctca
gagaacagtagcatggctacagggagtgcccaaggcaacttcactggacatacaaagaaa
actaatggcaataatggcgccaacggagcactcgtccaaagcacttctaaccagagtgcc
cttggagctggtggagcaaacggtaacggaaactcggccagggtgtggggggtggctgcg
ggctccagctctggcctagctcactgctctgccagcggtggggatggaaagatggacaac
atgattggagatggtagaagtcaaaactgctggggtgcttccaactcaaatgctggcatt
aatcttaaccttaaccctaatgccaatccagctgcctggcctgtactcggacatgaagga
actgtgggagcaggcaacccttccagtatttgcagtccagtcagtgccataggtcagaac
atgggcaaccagaatgggaacccaacaggcaccttaggtgcttggggaaacttgctgccg
caagagagcacagaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacct
cagaaccttaacactgatggaccaaataacactaaccccatgaactcttcaccaaaccct
atcaatgcaatgcagacaaatggactgccgaactgggggatggctgttggtatgggggcc
atcatcccgccccacctgcaaggccttcctggtgctaatggaacatcagtttctcaagtc
agtgggggcagtggtgaaggaatgggcagttcagtatgggggatgtcccccggtaatcct
gccacaggaaacagcaattctgggttcagtcaggggaatggagacactgtgaactcagca
ttaagtgctaaacaaaatggatccagcagtgctgtgcaaaaggaaggaaatggagcgagt
gcgtgggattcagggcctccttctggccctggggtactagcgtggggcaggggcggtggc
aacagcggtgttggtagcatgcattctggagcttggggccaccccaaccgtaacgccagt
aacggtgtaaacggtgaatggggcaagcccccaaaccagcattccaatagtgacatcaac
gggaaaggatcaacgggttgggatggctctagtgttaccagtccgaatcctgccatgcag
cagggcaatgaacaaatgaactcttgggccaaagctgcagcatctggcaccacagctagc
gaaggaagtaacgacagcggtggaagtcaaaacgaaggcagtactgggagggagggggct
ggagaaggcaggaggagagataaagggatgatagaccaagggcaagttcagttgccaaga
aatgaccttgaccccagggtcctgtccaatacagggtggggacagacccctgtaaagcaa
aacactgcctgggaatttgaagagtccccaaggtctgaacgaaagaatgacaatggaacg
gaggcctggggttgtgcagctactcaatcttcaaactcaggggggaagaacgatgggtcc
atcatgaacagtacaaatacctcttcagtatctgggtgggtcaactctccacctgcagct
gttccaacaaatacaggctggggagacaataacaacaaagcaccaaatggcccaggggga
tggggagagtcagcaagctctactactgttaataatgctgctgctgccaaaagcggccac
gcttggagtgggaccgcaaatcaggaggacaaatcacctacctggggtgaaccccagaaa
cccaaaactcaaaactggggagatggacagaaatcaaatccaagctggacttcaggaggc
ggagattggacagattcgtcatctgttcctggacacttgggtgatgggaagaagaatgga
tctggatgggactctgacaataggtcagggtctggttggaatgattccacgaggtctggg
accagtgggtggggaaatggcacaaacagcaaggctaatacaggtacaagttggggggaa
tcgttaaagccaggcccccaacaaaattgggctaataaaccccaggacaacaatgtgagt
aactggggaggagctgcttctgtaaaacagacggggtcagggtgggttggtgggccagtg
ccagccaaacaaaaagagaactgtgaggcaactggctgggaagagccatctccaccgtcc
attcgccgcaagatggaaatcgatgatggtacctcagcttggggcgatccaaattacaac
aacaacaagactgtaaacatgtgggatagaaataatcctataattcagagcagtaccaca
accaataccaccaccactagcaccattatcaacacaaacatggttgaacctcagccatcg
caccagtcaagtgcccagccgaaccggtccccgctgcttggtccagcaggctggggagaa
atgcctaacgtccacacaaagaccgaagcttcttggggagagccgtcatccccttctgct
gcagttgataatggcacttcagcgtgggggaagccccccagcagtggtacagggtgggga
gataatcctgccgagtcggcagggacatacggaagaacaaatgctccagctgctgcccca
gcactgtgcaaaccagcttcaaaatctatgcaagaaggctggggcagtggtggggatgaa
gtgaatctcagtactagtcagtgggaagatgaagaaggagatatgtggaataatactgct
tcacaagaaagcagctcctcctgtaattcctgggggaatgccccaaagaaaggacttcaa
aagggcatgaagacatctagcaagcaagatgaggcctggatcatgaaccgcctgataaaa
cagctcacagatatgggcttccctagagagccagcggaagaggccttgaagagcaacaat
atgaatctcgatcaggccatgagtgctctgctggaaaagaaggtggaaatggacaagcgt
ggaatgggagtgaccgactataatggaatggtcaccaaaccccttggctgccgcccacca
ccaatctccaaagagtcttccatggaccgccccaccttccttgacaaggatggcggccta
gtggaagagcccactacttcaccatttttgccttcaccaagcctgaagctccccctttca
aacagtgcactccctaatcagaccctgggcgggattgcctcagggctgggcatgcaaaac
ttgaattcttctcgacagataccgagtggcaatctgggtatgtttggcaatagcggagca
gcacaagccaggaccatgcaacagccgcagcaaccgccagtgcaacctcttaattcatcc
cagcctagtcttcgtgctcaagtgcctcagtttctatcccctcaggttcaagcacagctt
ttgcagtttgcagcaaaaaacattggtctcaaccctgcactattaacctcgccaattaat
cctcagcatatgacgatgttgaaccagctctatcagctgcagctggcgtaccaacgttta
caaatccagcagcagatgttacaggctcagcgtaatgtttccggacccatgagacaacag
gagcagcaagttgcacgtacaatcaataacatgcagcagcagatccagcagcaccagcgc
cagctggcccaggccctgcttatgaagcagcagcctccccctccacatctatctttgcac
ccctctgcaggcaaatcagccatggatagcttttcaccccatccccaggctcccggcctt
cctgacctgcagaccaaagagcaacagtcttcaccgaacacctttgctccttaccctctt
gctggactgaacccgaacatgaatgtaaataacatggacattactggtggtttgtcagtg
aaggacacttctcagtcccagtctcgccttcctcagtggacacaccccaactcaatggat
aatctgtctagtgctgcttcttctcttgaccagaactccagcaagcacggtgctatacct
ggaggtttaagtattggtcctccgggaaagtcctccattgatgactcttacggccggtat
gatctgattcaaaacagtgaatcgcccgccagtccacccgtagctgttcctcacagctgg
tcacgtgccaaanctgatagtgataaaatttccaatggctccagcataaactggccacca
gagtttcatccaggagtgccatggaaaggactgcagaatattgatcctgaaaatgacccc
gatgttactcctggaagtgttccaactgggcctaccataaacaccacaatacaggatgtt
aatcgctatcttctcaagagtggagggtcatccccaacatcatctcagaatgccacgctg
ccttcatcgagtgcctggccgcttagtgcctccggctacagtagctctttcagcagcatt
gcatccgcacctagcattgcaggtaaattgtcagacatcaagtctacgtggtcctctggc
ccaatctctcacacacaagcctctttatcccatgaactatggaaggtacccagaaacact
actgctcctacaagacctcctccaggcttaacaaacaccaagccatcatctacatggggt
gccagtcccctgggttggaccagctcttactcctctggttcagcatggagtactgacagc
tcagggagaacaagcagctggctggttcttcgaaacctcacaccccagattgatggttcc
acactgcggacactgtgtttgcagcatggccctctaataacattccacctgaacctgaca
caagggaatgctgtggtccgatacagttccaaggaagaagcagccaaggcccaaaagtct
ctgcatatgtgtgtcctgggaaacactaccatcttggccgagtttgctggtgaagaggaa
gtaaaccgtttcttagcacaaggccagcccctgccgcccacctccagctggcagtccaac
actggaagcaaccagacgcgcctgggctcagcgggcggctcgcatggcttggtgcgtggt
gacgccggccactggaacagcccctgtctgggcggcaagggcagcagcgacctgctgtgg
ggtggggtgccccagtactccagcagcctctggggaccccccagcaccgacgacggcaga
gttatcgggagccccacacctctgaatactcttcttccaggtgatcttctcagtggggag
tccatctag
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