Cygnus atratus (black swan): 118260598
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Entry
118260598 CDS
T09349
Symbol
VPS16
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04140
Autophagy - animal
cata04148
Efferocytosis
cata05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118260598 (VPS16)
04148 Efferocytosis
118260598 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
118260598 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cata04131
]
118260598 (VPS16)
Membrane trafficking [BR:
cata04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118260598 (VPS16)
Hops complex
118260598 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
118260598
NCBI-ProteinID:
XP_035426865
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All DBs
Position
4:77368367..77377122
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AA seq
838 aa
AA seq
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MDCYTANWNPLGEEAFYRKSELYAMEWGLREELRDCLVAAAPYGGPIALLRNSARREKSP
GARPLLDTFSASGLLLASIPWKSGQVVQLGWTASEDLLCIQEDGTVLIYNLFCEFKRHFS
MGNEVLQNHVLEAKVFHTEYGTGVAILTGAHRFSLATNIDDLKLRRMPEVPGLQKPPSCW
AVLSQDRVTIVLLAVGQDLYLLDNTSCSVVAPPGMSPSAGAYLQMAVSFNYRCLALFTDT
GYIWMGLASLKEKLCEFNSSIRSPPKQMVWCMRPRSRQRAVVMAWDRQLMVVGNSTECIR
FVLDEDSYLVPELDGVRILSRTSHEFLHEIPEASQEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIKDQKLLPEAVSQCIEAAGYEHEPETQKSLLRAASFGKCFIDKFPPESFVR
MCQDLRVLNAIRDYQIGIPLTFTQYKRLTIEVLLDRLVLRRLYPLAIRICEYLRLSEIQG
VSRILAHWACYKVQQKDKSDEEVAYAINQKLGDTPGISYSEIAARAYDCGRTELAIKLLE
YEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVYTVVLHLKNELNRGTFFMTLQNQPVA
LSLYRQFCKHQERETLKDLYNQDDNHQELGNFHVHSSYSEKRIEGRVGALQNAVDEYYKA
KNEFAAKATEDQIKLLRLQRHLQEDFDKPYLDLSLHDTVSTLILDGHHKKAEQLYRDFKI
PDKRYWWLKINALATRGDWEEMEKFSKSKKSPIGYLPFVEIAVKHHNRYEAKKYAPRVTP
EQRVKAFILVGDLDQAADAAIEHKSEVEMNFVLSKCTPSTDASVVEKLNRARAQLLKK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacacggccaactggaacccgctgggcgaggaggccttctaccgcaagtcg
gagctgtacgccatggagtggggcctgagggaggagctgcgggactgcctggtggcggcc
gccccgtacggggggcccatagctctgctccggaactccgcccggagggagaagtcgccc
ggcgcccgcccgctgctggacacgttctcggcctcggggctgctcctcgccagcatcccg
tggaagagcggccaggtggtgcagctgggctggacggccagcgaggacctgctgtgcatc
caagaggacggcacggtgctcatctacaacctcttctgcgagttcaagcgccacttcagc
atgggcaacgaggtgctgcagaaccacgtgctggaggcgaaagtcttccacacggagtac
ggcaccggcgtggccatcctcaccggggcgcaccgcttctcgctggccaccaacattgac
gacctgaagctgcgcaggatgcccgaggtcccaggtctgcagaagcccccctcctgctgg
gccgtgctgtcccaggacagagtgaccatcgtcttgctggcggttggccaggacctgtac
ctgctggacaacacctcctgctccgtggtggccccccccggcatgagcccctctgccggc
gcctacctgcagatggccgtgtccttcaactaccgctgcctggcgctcttcaccgacacc
ggctacatctggatggggctggcctcgctgaaggagaagctctgcgagttcaacagcagc
atccgatcgccgcccaagcagatggtttggtgcatgcgtccccgcagccggcagcgcgcc
gtggtgatggcatgggaccggcagctgatggtggtcgggaactccacggagtgcatccga
tttgtcctggatgaggactcctacctggtgccagaactggatggggtccggatcttgtcc
cgcacctcccacgagttcctgcatgagatcccagaggccagccaagagatcttcaaaatc
gcctccatggcaccaggggctctcctgttagaggcgcagaaggagtacgagaaggagagc
cagaaggcagacgagtacctgcgggagatcaaggaccagaagctgctcccggaggcggtg
agccagtgcatcgaggcggctggctacgagcacgagccggagactcagaagtccctgctg
cgggcagcctcctttgggaagtgcttcatcgacaagttccctccggagagctttgtgcgc
atgtgccaggacctgcgggtgctcaacgccatccgggactaccagatcggcatccccctc
accttcacccaatacaagcggctcaccatcgaggtcctgctggacaggctggtcctgcgg
cgcctctatcccctggccatcaggatctgcgagtacctgcgcctctcggagatccagggc
gtcagccgcatcctggcccactgggcctgctacaaggtgcagcagaaggacaagtccgac
gaggaggtggcctacgccatcaaccagaagctgggggacacgccgggcatctcctactcc
gagatcgccgcccgggcttacgactgcggccggacggagctggccatcaagctgctggag
tatgagccgcgctccggggagcaggtcccgctgctgctgaagatgaagcggagcaagctg
gccctgagcaaggccatcgagagtggggacacggacctggtctacacggttgtgctccac
ctgaagaacgagctgaatcgcggcaccttcttcatgacgctgcagaaccagccggtggcc
ctgagcctctaccgccagttctgcaagcaccaggagcgggagacgctgaaggacctgtac
aaccaggacgacaatcaccaggagctcggcaacttccacgtccactccagctactcggag
aagcgcatcgaagggcgagtaggagccctgcagaacgctgtggatgagtactacaaggcc
aagaacgagtttgctgccaaggccacagaggatcagatcaagctcctgcggctccagcgg
cacctccaggaggacttcgacaagccctacctcgacctctcgctgcatgacaccgtctcc
accctgatcctggacggccaccacaagaaggccgagcagctctaccgggacttcaagatc
cccgacaagcgctactggtggctgaagatcaacgccctggccacgcgcggagactgggag
gagatggagaagttctccaagagcaagaagtcgcccatcggctacctgcccttcgtggag
atcgctgtgaagcaccacaaccgctacgaggccaagaagtacgcgccccgcgtgacgccc
gagcagcgggtcaaggcctttatcctcgtgggggacctggaccaggcggccgacgctgcc
atcgagcacaagagcgaggtggagatgaactttgtcctgtccaagtgcacccccagcacg
gacgccagcgtggtggagaagctgaaccgggcccgggcccagctcctgaagaagtga
DBGET
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