Cygnus atratus (black swan): 118261397
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Entry
118261397 CDS
T09349
Symbol
SYVN1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata04120
Ubiquitin mediated proteolysis
cata04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
118261397 (SYVN1)
04120 Ubiquitin mediated proteolysis
118261397 (SYVN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cata04121
]
118261397 (SYVN1)
Enzymes [BR:
cata01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118261397 (SYVN1)
Ubiquitin system [BR:
cata04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118261397 (SYVN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
zf-RING_2
zf-C3HC4
zf-rbx1
Suf
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
TPR_14
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
zf-Nse
zf-C3H2C3
Endonuclease_7
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
118261397
NCBI-ProteinID:
XP_035428109
LinkDB
All DBs
Position
Unknown
AA seq
658 aa
AA seq
DB search
MLCTAAVMAGSLALTTAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWLFHFRIVSLMFLLGILDFLFVSHAYHSILTRGASVQLVFGFEYAI
LMTMVLTIFIKYVLHSIDLQNENPWDSKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAVDNVCIICREEMVT
GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQPPPEPPEQPQPPPQTPPAP
QPPNFPQGMLPPFPPGMFPFWPPVGPFPPAPNGSENPAPSPAAASAPRAADASALPLPPP
WLAMPWPPLFGFPPMPVPPAGFAGLTAEELRALEGHERQHVEARLRCLRDIHTLLDAAML
QINQYLSVLAALGPPRPPTAAPQPPTTTEPGAPSPPAEPSSSDPPGPSGAEGFTPRPEEE
EEEDEEEEAEGSPVPGEPDTAELRRRRLRKLGDPEPPADEAAPGYPPDFEKFWRAARDNP
HDFTAWTELLQYVEQENHLPAARKAFDAFFSHYPYCYGYWKKYADMERRFHCGPETEE
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgcacggcggcggtgatggcggggagcctggcgctcaccacggccgtggtggcg
cacgcctactacctcaagcaccagttctaccccaccgtggtttatctcaccaaatccagc
cccagcatggccgttctctacatccaggccttcgtgctggttttcctgctgggcaaattc
atgggcaaggttttcttcgggcagctgcgggcggcggagatggagcacctcctggagcgc
tcgtggtacgcggtgacggagacctgcctggccttcaccgtcttcagggacgacttcagc
ccccgcttcgtcgccctcttcaccctcctcctcttcctcaagtgcttccactggctggcc
gaggaccgggtggacttcatggagcggagccccaacatctcctggctcttccacttccgt
atcgtgtccctcatgttcctgctggggatcctggatttcctcttcgtcagccacgcgtac
cacagcatcctcacgcggggagcctccgtccagctggttttcggcttcgagtacgccatc
ctcatgaccatggtcctcaccatcttcatcaagtacgtcctgcactccatcgacctgcag
aacgagaacccctgggacagcaaagccgtctacatgctgtacacggagctcttcacgggt
ttcatcaaagtcctcctctacatggccttcatgaccatcatgatcaaagtgcacaccttc
cccctcttcgccatccgccccatgtacctggccatgaggcagttcaagaaagccgtgacc
gacgccatcatgtcccgccgcgccatccgcaacatgaacacgctctaccccgacgccacc
ccggaggagctgcaggccgtggacaacgtctgcatcatctgccgcgaggagatggtgacg
ggcgccaagcgcctgccctgcaaccacatcttccacaccagctgcctgcggtcgtggttc
cagcggcagcagacgtgccccacgtgccgcatggacgtgctccgcgcctccctccccgcg
cagccccccccggagccccccgagcagccgcagcccccgccgcagaccccgccggcgccg
cagcccccgaacttcccgcaggggatgctgccgccctttcccccgggcatgttccccttc
tggccccccgtggggcccttccctcccgcccccaacggctccgaaaacccggctccgagc
cccgctgccgcttcagctcccagggccgccgacgcctccgcccttcccctcccgcccccg
tggctggcgatgccgtggcctccgcttttcgggttccccccgatgccggtgccccccgcg
ggcttcgcggggctgacggcggaggagctgcgggcgctggagggccacgagcggcagcac
gtggaggcgcggctgcggtgcctgcgggacatccacacgctgctggacgccgccatgctg
cagatcaaccagtacctgagcgtgctggcggcgctggggcccccccggccccccaccgct
gccccccaaccccccaccaccacggagcccggtgccccctcgccccccgccgagcccagc
tcctccgatcccccgggcccctcaggcgccgaaggcttcaccccccgccccgaggaggag
gaagaggaggacgaggaggaggaggccgaaggctcacccgtgcccggcgaacccgacacg
gccgagctgcgccgccgccgcctgcggaaactgggggaccccgagccccccgcggacgag
gccgcccccggttaccccccggacttcgagaagttctggcgggcggcgcgcgacaacccc
cacgacttcaccgcctggaccgagctgctgcagtacgtcgagcaggagaaccacctgccg
gccgcccgcaaggctttcgacgcctttttctcgcactacccgtactgctacggctactgg
aagaagtacgccgacatggagcgccgcttccactgcgggcccgagaccgaggag
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