Cygnus atratus (black swan): 118261516
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Entry
118261516 CDS
T09349
Symbol
SMARCA4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118261516 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118261516 (SMARCA4)
03036 Chromosome and associated proteins [BR:
cata03036
]
118261516 (SMARCA4)
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118261516 (SMARCA4)
Chromosome and associated proteins [BR:
cata03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
118261516 (SMARCA4)
Chromatin remodeling factors
BAF complex
118261516 (SMARCA4)
PBAF complex
118261516 (SMARCA4)
GBAF(ncBAF) complex
118261516 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
118261516
NCBI-ProteinID:
XP_035428266
LinkDB
All DBs
Position
Unknown
AA seq
1642 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPLPPQG
PGPYAQDNMHQMHKPMDSMHEKGIADDPRYGQMKGMGLRPGGHAGMGPPPSPMDQHSQGY
PSPLGGSEHASSPVPANGPASAPPLPSGPAGVPLDGADPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPEHLQMAVQGKRPLPGMQQQLPTLPPPSVAAAGPVQGPGPGPTP
PNYSRPHGIGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPLANAAAPTSTPQKLIPPQ
PTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVQLHQKQNRITPIQKPRGLDPVEI
LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR
DTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDF
KEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKK
DKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPL
DETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEE
EEEEEEQPQPAQPALPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARG
LQSYYAVAHAVTERVDKQSTLMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI
QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ
LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL
LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRR
LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKK
GKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDR
ILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGS
EYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTV
NSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDENRYSAGSGS
GSASFPHTASTLCLNAELEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREE
ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQ
WLKVYMAIEEGTLEEIEEEVRQKKSSRKRKRDTDVGSATPTTSTRSRDKDEESKKQKKRG
RPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKP
VDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKI
EKEEESEGEDSEEEEEGEEEGSESEARSVKVKIKLGRKEKAQERLKGRRRTSRGSRAKPV
VSDDDSEEEQEEDRSGSGTEDD
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccggaccctccgatgggcggcacgccgcggccgggtccctcgccgggcccg
ggcccctcgccgggcgcgatgctgggccccagccccggaccctcgcccggctccgctcac
agcatgatggggcccagccccggccccccctcggccgggcacccgctgccgccccaaggg
cccgggccctacgctcaggacaacatgcaccagatgcacaagcccatggactcgatgcac
gagaagggcatcgccgacgacccgcgctacggccagatgaagggcatggggctgaggccc
ggcgggcacgcgggcatggggcccccccccagccccatggaccagcactcgcaaggttac
ccctctcccctggggggctcggagcacgcctcgagcccggtgcctgccaacggcccggcc
tccgccccgccgctgccctccggccccgcgggggtcccgctggacggcgccgacccgcag
gccctgggccagcagaaccggggcccgaccccgttcaaccagaaccagctgcaccagctg
cgggcccagatcatggcctacaagatgctggcccggggccagccgctccccgagcacctc
cagatggccgtgcagggcaaacggccgctgcccggcatgcagcagcagctgcccacgcta
cctccaccctccgtggccgccgcggggccggtgcaagggcccggaccgggaccgacgcct
ccaaactacagcagacctcacggtataggagggcccaacatgccccctcccggaccctca
ggagttcccccaggaatgcctgggcagcccccgggcggcccccccaagccctggcctgaa
ggcccactggcgaatgctgcagcccccaccagcacacctcagaagctgatccccccccag
ccgaccggccggccctccccggctcccccggccgtgccccccgccgcctcccccgtgatg
ccgccccagacgcagtccccggggcagccggcgcagccggcccccatggtgcagctgcac
cagaagcagaaccgcatcacccccatccagaaaccccgggggctcgaccccgtggagatc
ctgcaggagagggagtacaggctgcaggctcgcatcgctcaccggatccaagagctggaa
aaccttcccggctccctggccggcgacctgagaaccaaagcgaccatcgagctcaaagcg
ctgcggctgcttaacttccagagacagctgcgtcaggaagtggtggtgtgcatgcggcgg
gacacggccctggagacggccctgaacgccaaggcctacaagcgcagcaagcggcagtcg
ctgcgcgaggctcgcatcaccgagaagctggagaagcagcagaagatcgagcaggagcgg
aagcgccggcagaagcaccaggaatacctcaacagcatcctccagcacgccaaggacttc
aaggagtaccaccgctccgtcacgggcaagatccagaagctcaccaaggcggtggccacc
taccacgccaacacggagcgcgagcagaagaaggagaacgagaggatcgagaaggagcgg
atgcgccgcttgatggctgaggatgaggaagggtaccgcaagctgatcgaccagaagaag
gacaagcggctggcctacctgctgcagcagacggacgagtacgtggccaacctgacagag
ctggtgcggcagcacaaggctgcccaggtggccaaggagaagaagaagaagaagaagaag
aagaaggcagagaacgcagaagggcagacccccgccatcgggccggacggcgagcctctg
gatgagacgagccagatgagcgacctccccgtgaaagtgatccacgtggagagcggcaag
atcctcaccggcaccgacgcccccaaagcggggcagctggaggcctggctggaaatgaac
cccgggtatgaggtagctccgagatctgacagtgaagaaagtgggtcagaggaggaggag
gaggaggaggaggaggagcagccgcagcccgctcagccggcgctgcccgtggaggagaag
aagaagatccccgaccccgacagcgacgacgtgtcggaggtggacgcccggcacattatc
gagaacgccaagcaggacgtggacgacgagtacggcgtgtcgcaggcgctggccaggggc
ctgcagtcctactacgccgtggcccacgccgtcaccgagagggtggacaagcagtccacg
ctgatggtcaacggcgtcctcaagcagtaccagatcaagggcctggagtggctggtgtcc
ttgtacaacaacaacctgaacggcatcctggcagacgagatgggtctgggcaaaacgatc
cagaccatcgctttaatcacatacctcatggagcacaagcggatcaacggccccttcctc
atcatagtacctctctcaaccctgtcgaattgggcgtacgagtttgacaaatgggctcct
tctgtggtgaaggtctcctacaagggctccccggcagcaagacgggcgtttgtacctcag
ctccgcagcgggaaattcaacgtcctgctcacgacgtacgagtacatcatcaaagacaag
cacatcctcgccaagatccgctggaagtacatgatcgtggacgagggccacaggatgaag
aaccaccactgcaagctcacccaggtcctcaacacgcactacgtggccccgcgccgcctg
ctgctgacgggcaccccgctgcagaacaagctcccggagctctgggccctgctcaacttc
ctcctgccgaccatcttcaagagctgcagcaccttcgagcagtggttcaacgcccccttt
gccatgacgggggagaaggtggacctgaacgaagaggaaaccatcctgatcatcaggcgc
ttacacaaagtgctgcgccccttcctgctgcgaaggctgaagaaggaagtggaagctcag
ctgcccgagaaggtggagtacgtgatcaagtgcgacatgtcggccctgcagagggtgctc
tacaggcacatgcaggccaagggcgtgctcctcaccgacggctccgagaaggacaaaaag
ggtaaaggcgggacaaaaaccttgatgaacaccatcatgcagctgaggaagatctgcaac
cacccctacatgttccagcacatcgaggaatccttttccgagcacttggggttcactgga
ggtatcgtgcaaggactggatttgtaccgtgcctcgggcaaatttgagctcctagacaga
atcctccccaagctgcgagccaccaaccacaaggtgctgctcttctgccagatgacctcc
ctcatgaccatcatggaagattattttgcttaccgtggattcaaatacctcaggctggac
ggaaccactaaagccgaagaccgcggcatgttgttaaagactttcaatgagccaggctct
gagtacttcatttttttgctcagcacccgggctggcgggctgggcctgaacctccagtct
gcagatactgtgattatctttgacagcgactggaaccctcaccaggacctgcaggcgcag
gaccgagcgcaccgcatcgggcagcagaacgaggtgcgcgtcctccggctctgcaccgtc
aacagcgtggaggagaagatcctcgccgccgccaagtacaagctgaacgtcgaccagaag
gttatccaagccggcatgtttgaccagaagtcctcgagccacgagcgaagagccttcctc
caggctatcctggagcacgaggagcaggacgagaacagatacagcgcgggcagcggcagt
ggcagtgcaagcttcccccacactgcctcaaccctgtgcctgaacgctgagttggaggaa
ccacctctaaaggaggaagacgaagtccccgacgacgaaacggtcaaccagatgatcgcg
cggcacgaggaggagtttgaccttttcatgcgcatggacctggaccgccggcgggaggag
gcgcgcaaccccaagcgcaagccgcggctgatggaggaggacgagctgccctcgtggatc
atcaaggacgacgccgaggtggagaggttaacgtgcgaggaggaggaggaaaaaatgttc
gggcgaggctcccggcaccgcaaagaggtggactacagtgactcgctgacggagaagcag
tggctcaaggtatacatggcgatcgaggagggcacgctggaggagatcgaggaggaggtg
cgccagaagaagtcctcccgcaagcgcaagcgggacacggacgtgggctccgccaccccc
accaccagcacccgcagccgggacaaggacgaggagagcaagaagcagaagaagcgcggc
cggccgccggccgagaagctctccccgaacccgcccaacctcaccaaaaagatgaagaag
atcgtggatgccgtcatcaagtacaaggatagcagcagtggccgccagctcagcgaggtc
ttcatccagctcccctctcgcaaggagctgcccgagtactacgagctcatccgcaagccg
gtcgacttcaagaaaatcaaggagcgcatccgcaaccacaagtaccgcagcctgaacgac
ctggagaaggacgtgatgctgctgtgccagaacgcgcagaccttcaacctcgagggctcc
ctgatttacgaggactccatcgtgctgcagtccgtcttcaccagcgtgaggcagaaaatc
gagaaggaggaggagagcgaaggtgaggacagtgaggaggaggaggaaggcgaagaggaa
ggatctgaatcagaggcccggtccgtgaaggtgaaaatcaaactggggcggaaggagaag
gcgcaggagcggctcaagggccgcaggcgcaccagccgcggctcccgcgccaagcccgtg
gtgagcgacgacgacagcgaggaggagcaggaggaggatcgctccggcagcggcaccgaa
gacgactga
DBGET
integrated database retrieval system
