Cygnus atratus (black swan): 118261668
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Entry
118261668 CDS
T09349
Symbol
SUPT5H
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118261668 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cata03021
]
118261668 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
cata03019
]
118261668 (SUPT5H)
Transcription machinery [BR:
cata03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
118261668 (SUPT5H)
RNA polymerase I system
118261668 (SUPT5H)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
118261668 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
118261668
NCBI-ProteinID:
XP_050572634
LinkDB
All DBs
Position
Unknown
AA seq
1073 aa
AA seq
DB search
MSDSDDSNFSEEESERSSEAEEAEAEEEHASAAGSEKEEAEEEEEEEEYDEEEEEEDDDR
PAKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARRLQNLW
RDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEE
RATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRMGY
WNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGIYKDDIAQVDYVEPSQNQISLKMIP
RIDFDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRK
GFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVC
EGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDT
GLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDPQTVGV
IVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSG
REGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVAGFTPMSPRI
TSPMHPSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARV
ELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGSQTPLH
DGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQGYGGT
PNPQTPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAVPSPQGSYQPSPSPQSYHQV
APSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSGIEQ
SSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVTGGMCSVYLKDSEKVVSISSEHLEPVT
PTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEA
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgacgacagcaacttctcggaggaggagagcgagcgcagcagcgaggcc
gaggaggccgaggctgaggaggagcacgccagcgcagccggcagtgagaaggaggaggca
gaggaggaggaggaggaagaggagtacgatgaggaggaggaggaagaagatgacgaccgg
ccagccaaaaaaccccgccacgggggcttcatcctggacgaggccgacgtcgacgacgag
tacgaggacgaggaccagtgggaggatggggccgaggacatcctggagaaagcttccaac
atcgacaacgtggtgctggacgaggaccgctcaggcgctcggcggttgcagaatctctgg
agggatcaacgcgaggaggagctgggcgagtattacatgaagaaatacgccaagtcctca
gtgggagagaccgtttacggcggctccgatgagctctcggatgacatcacgcagcagcag
ctgctgcctggagtcaaggatcccaacctctggactgtgaagtgcaagatcggcgaggag
cgcgccacagccattgccctgatgcggaaattcatcgcctaccagttcaccgacacaccc
ctgcagatcaagtcggtggtggcccccgagcacgtcaagggctacatctacgtggaggcg
tacaagcagacgcacgtgaagcaggcgatcgagggcgtgggcaacctgcgcatgggctac
tggaaccagcagatggtccccatcaaggagatgacagacgtgctgaaggtggtgaaggag
gtcaccaacctcaagcccaagtcctgggtgcgcctcaagagggggatctacaaggacgac
atcgcccaggtggattacgtggagcccagccagaaccagatctccctcaagatgatcccc
cgcatcgacttcgaccgcatcaaagcccgcatgagcctgaaggactggtttgccaagcgc
aagaagttcaagcgccccccccagcggcttttcgatgctgagaagatccgctccctggga
ggcgacgtggcatcggatggagacttcctcatctttgaaggcaaccgctacagccgcaag
ggctttctcttcaagagcttcgccatgtcggccgtgatcacggaaggcgtgaagcccacc
ctgtcggagctggagaagttcgaggaccagcccgagggcattgacttggaggtggtgacg
gagagcacagggaaggagcgtgagcacaacttccagcccggtgacaacgtggaggtgtgc
gagggcgagctgatcaacctgcagggcaagatcctcagcgtcgatggcaacaagatcacc
atcatgcccaaacacgaggacctgaaggacatgctggagttcccagctcaggagctgcgc
aagtatttcaagatgggcgaccacgtgaaagtgatcgcggggcgttttgagggtgacacg
ggcctcatcgttcgggtggaggagaactttgtcatcctcttctctgacctcaccatgcac
gagctcaaggtgctaccgcgggacctgcagctctgctcggagactgcctcgggcgtggac
gttggggggcagcacgagtggggcgagctggtgcagctggacccccagaccgtgggcgtc
atcgtccgcctggagcgcgagaccttccaggtgctgaacatgtacgggaaggtggtgacg
gtgcggcaccaggctgtcaccaggaagaaggacaaccgcttcgccgtcgccctcgactcg
gagcagaacaacatccacgtcaaggacattgtcaaggtcatcgacgggccccactcgggc
cgcgagggggagatccggcacctcttccgcggctttgccttcctgcactgcaagaagctg
gtggagaacggcggcatgtttgtctgcaagacccgacacctcgtcctggccggtggttcc
aagccacgggacgtcaccaacttcacagtggctggctttactcccatgagcccccgtatc
accagcccaatgcaccccagcggggctggccagcgcggcggctttggcggtggcggcatg
agccgtgggcgcgggcggcgggataacgacctcatcgggcagacggtgcgcatctcccaa
ggaccttacaaaggctacattggggtggtgaaggacgcaacggagtcgacggcccgcgtg
gagctgcactccacctgccagaccatctcggtggaccgccagcgcctgaccacagtgggc
tcgcggcgccctggtgggatgacatcgacctatgggcgcaccccaatgtacggctcccag
accccgatgtacggctcgggctcccgcaccccgatgtacggctcccagacgcccctgcat
gacggcagccgcacgccacactacggctcgcagaccccgctgcacgatggcagccgcacg
cctgcccagagcggtgcctgggatcccaacaaccccaacacgccttccagggccgacgag
gactttgagtacggcttcgatgatgagcccacgccctcaccgcaaggctacggtggcacc
cccaatccgcagacccccggctaccccgacccctcgtccccacaggtcacccagccgtac
aacccccagacccctggcacgccggccatgtacaacaccgaccagttctccccctacgcc
gtgccatcgccacagggctcctaccaacccagccccagcccccagagctaccaccaggtg
gcccccagccccgtgggctaccaaaacacccactcgccggccagctaccaccctacacca
tcgcctatggcctaccaggccagccccagccccagcccagtggggtacagccccatgacc
cccggggcgccatccccgggggggtacaacccccacacccccggttcgggcatcgagcag
agctccagtgactgggtgaccaccgacatccaggtgaaggtccgggacacctacctggac
agccaggcggtgggacagacgggcgtcatccgcagcgtcacgggggggatgtgctccgtg
tacctgaaggacagcgagaaggtggtgagcatctccagcgagcacctggagcccgtcacc
cccaccaagagcaacaaggtgaaggtgatcctgggtgaggaccgggaggccaccggcatc
ctgctcagcatcgacggcgaggatggcatcgtccgcatggacctggacgagcagctcaag
atcctcaacctgcgcttcctgggcaagctcctggaggcctga
DBGET
integrated database retrieval system
