Cygnus atratus (black swan): 118261671
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Entry
118261671 CDS
T09349
Symbol
CASC3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
cata
Cygnus atratus (black swan)
Pathway
cata03013
Nucleocytoplasmic transport
cata03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cata00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118261671 (CASC3)
03015 mRNA surveillance pathway
118261671 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cata03019
]
118261671 (CASC3)
Messenger RNA biogenesis [BR:
cata03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118261671 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
118261671
NCBI-ProteinID:
XP_035428475
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
LNFQGRLRQDWGQAVPSQRLGSLHAAGISCRPPPPPLKQPFCPLSLQESEDGIEGDAVLS
DYESAEDSEAEEEDYSEEESAKVELKQDSNDSCESAAKAEKGDEKPDAKGAVTGERQSGD
GQESTEPVENKVGKKAPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRK
LWKDEGRWEHDKFREDEQAPKTRQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRD
PNWSGERPSKPPRHQGADSASAPPRTFTSRSSAGTGRMPPPRNYPRMGGYKETRPGYRAS
EASVPHLSRNGEQAKQEAGYRAKRAEQTPPRAKSPELEAAHVHGSPGKEEVALENQPPSA
DAAQPPPDRPVEKKSYSRARRTRAKAGDAGKAADEAPASEGLAPVPPKPAQAEASPPPAK
SSSWESPVESGLDGLEQEMTQMNLAEQSWAPGQSQFIQPRELRGIPNHMHVGTGPPPQFN
RMEEMAVQGGRVKRYSSQRQRPPVPEPAPPMHISIMEGHYYDPLQFQGPIYTHSENPAPL
PPQGMIVQPEMHLPHPGLHPHQTPAPMANPGLYPPPVSMPPGQPPPQQLLAPTYFSPPGV
MNFGNPGYPYPPGALPPPPPPHLYSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQP
VTIKPPPPEDSKSEKSKERSNT
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
ctgaacttccaagggcggctgcgacaggactggggccaggccgtgccgtcgcagcgcctg
gggtcgctgcatgctgcgggaatcagctgccggcctcccccccccccactaaaacaacct
ttctgtcccctctctctccaggaaagcgaggacggcatcgaaggagatgccgtgctctcg
gattacgaaagcgcagaagactcggaggcagaggaagaggattacagcgaggaagaaagc
gcgaaagtggaattgaagcaggatagcaacgattcctgcgagtccgcagcgaaagcagag
aaaggggacgagaaacccgacgccaaaggtgctgtaaccggtgagaggcaaagcggggac
gggcaggagagcaccgagcccgttgagaataaagtcgggaaaaaagcccccaagcacctg
gacgatgacgaggaccgcaagaacccggcctacatcccacgcaaagggctcttcttcgag
catgacctgcgagggcagacgcaggaggaggaggtcaggcccaagggtcggcagcggaag
ctgtggaaggacgagggccgctgggagcacgacaagttccgggaggacgagcaggccccc
aagaccaggcaggagctgatcgcgctctacggctacgacatcaggtcggctcacaacccc
gacgacatcaagccgaggaggatgcgcaaacccaggtttgggagccctcctcagcgagac
cccaactggtccggcgagaggccgagcaagcccccgaggcaccaaggcgcagacagcgct
tcggctcccccgcgaaccttcaccagcaggagctctgcgggaacggggaggatgccccca
cccaggaactacccgaggatggggggctacaaagagacccgtccgggctaccgagcctcg
gaagccagcgtgccgcacctctctcgaaacggcgagcaggcgaagcaggaggccggctac
cgagcgaagcgcgccgagcagaccccgccgagggccaagtccccggagctggaagcggcg
cacgtccacggcagccccgggaaggaggaggttgctctggaaaaccagcccccgagcgcc
gacgccgcgcagccgccgccggacagacccgtcgagaagaagtcttactcccgggcgagg
aggaccagagccaaagctggggacgcggggaaggcggcggatgaagcgcctgcttcggaa
gggctggctcccgtgcccccgaaacctgcgcaagccgaggcgtcccccccgccagccaag
agcagcagctgggagtcgccggtggaatccggcttggatggactggagcaagagatgacg
cagatgaacctcgcggagcagagctgggctccggggcagtcgcagttcatccagccccgg
gagctgaggggcattcctaaccatatgcacgtgggaacggggccgccgcctcagtttaac
aggatggaggaaatggcggtgcaggggggccgcgtgaagcgctactcatcgcagcggcag
agaccgccggtgccagagcctgccccccccatgcacatcagcatcatggaagggcactac
tacgacccactacaattccagggaccaatctacacccacagcgagaacccggccccgctg
ccgccccaggggatgattgtgcagccagaaatgcatctccctcatccaggtttacacccc
caccagacgccagccccgatggcaaaccccggcctttaccctccgccggtctccatgcct
ccgggccagcccccgccgcagcagctgcttgcaccgacttacttctccccgcctggagtc
atgaattttgggaaccccggctacccctaccccccgggagcgctgcccccgccgccccct
cctcacctctattccaacacgcaggcgcagtcccaggtgtacggcggggtcacgtactac
aacactgtccagcagcaagtgcagcccaaaccttcgccgccgcgaaggacgtcccagccg
gtcaccatcaagccgccgcctcccgaggacagcaaaagtgaaaaatcaaaggagaggagc
aacacgtag
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