Saccharobesus litoralis: C2869_05655
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Entry
C2869_05655 CDS
T05408
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cate
Saccharobesus litoralis
Pathway
cate03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cate00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2869_05655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cate03019
]
C2869_05655
03009 Ribosome biogenesis [BR:
cate03009
]
C2869_05655
Enzymes [BR:
cate01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C2869_05655
Messenger RNA biogenesis [BR:
cate03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2869_05655
Ribosome biogenesis [BR:
cate03009
]
Prokaryotic type
rRNA processing factors
C2869_05655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AWB65957
UniProt:
A0A2S0VP11
LinkDB
All DBs
Position
complement(1608818..1611916)
Genome browser
AA seq
1032 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQRLYDLDIEASGHEQKKASIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAKNYFPEGYTFSGRPNIKDVVQEGLEVIVQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALNKLELPKGMGLIVRTAGVGKSYEEL
EWDLNLLKHHWKEIQRAADERPSPFLIHQEGDVIVRAIRDYLRRDVDEILIDSKKVFERT
REHISRVRPDFINRVKKYDGDRPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSKATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPARNQREVEN
RLRDATRQDRARIQLSRISRFGLLEMSRQRLRPSLGDNANIPCPRCSGTGNIRSTESLAL
SILRLLEEEAIKENTVQVRATVPVDVATYLFNEKRGAVRFIEKSHGVRVLVLPNPHLDSP
HYEMVRLKKDDLTDELSYALVKTPELELDPSIKQFVETPTTTAVQKEEPALKGFSAPPPA
PVAPAPTAQPKTDEKQPKSLFAKIADLFKSLFAVEEEPEPKKSTQKRGNQSRNGRGGKRS
GNNNRRGGNRNNRNRRPNGDKDEERKSQKTNERPNKERKPRRAETANTEVKEKVEERRQR
RNQRRKVRVKDNNQEKTENQAVNTLDVANETEAKAPKAPASKPQQEEKALGTATAKTVDD
KPIADNNSAETSAVSDEKNVVDNAETKKTTEKRREGRSRRTPRHLRTSGQKRRKDETKPE
TTAEASNQHPEVTQAESQELYSHPEPSPDPVESRYPGVEQSSVANEDKTAPVAEETKVEA
QTPVVAETDKVDVKEGENTTTPSTTVTATVEAPQVRQEFQQSLPLESTETEVEATTAAVE
AVEAVEAVEAVEAVEAVEAVEAVEAVEAEAKPIASSEQPVTTPNSSSDAVTEAIALSETT
EGLNQQHKPSFTAKGHAFAPMAKTQPEQLDLSQALKIEAMPVDQRLLIKTSGKAAGGQNA
SGQSQSSMTRAV
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttaatcaatgcaacgcaagaagaagaattgcgcgttgctctggtagac
ggccaacgtttatacgatttagatatcgaagcgtcaggccacgagcaaaaaaaagccagt
atctataaaggtaaaattacccgcgtagaacccagccttgaagctgcttttgtcgactat
ggtgctgagcgccatggtttcctacctttaaaagaaatcgctaaaaactacttccctgaa
ggctatacgttttcaggccgccctaatatcaaagacgttgtacaagaaggcttagaagtc
attgttcaaattgataaggaagagcgcggtcaaaaaggggctgcattaacgacctttatc
agcttagcgggtagttatctggttttaatgccaaataatcctcgcgctggtggtattagc
cgtcgcatcgagggtgacgagcgcaccgaattaaaagaagcactgaataagcttgaatta
cctaaaggcatgggcttaattgttcgtactgccggtgtaggtaaatcttatgaagagcta
gaatgggatttaaatttacttaagcatcactggaaagaaattcagcgtgctgctgatgaa
cgtccatcacctttcttaattcatcaagaaggcgatgttatcgttcgtgcaattcgcgat
tacttacgccgtgatgtcgatgaaattcttatcgatagtaaaaaagtattcgagcgtacg
cgagaacatatatcacgtgttcgtcctgactttattaaccgtgtgaaaaagtatgatggt
gatcgaccgttatttactcactaccaaatagaaagtcagatcgagtctgcattccaacgt
gaagtacgcttaccatcaggtggttcaatagttattgatccgaccgaagcgttaacatca
attgatatcaactcatctaaagcaacaaaaggtggtgatattgaagaaaccgcactcaac
accaatttagaggcagctgacgaaatagctcgccaactacgtttacgtgatttaggtggt
ttagtggttatcgactttatcgatatgacaccggcacgcaaccaacgtgaagtcgaaaac
cgccttagagatgcaacccgtcaagacagagctcgaattcaattaagtcgaatttctcgt
ttcggcttgctagaaatgtctcgtcaacgtttacgcccttctctgggtgataatgccaac
ataccttgtccacgctgctcaggcacgggcaatattcgttcaactgagtcactggcctta
tcgattcttcgcttacttgaagaagaagcgattaaagaaaacacagtgcaagtcagagcg
acagtgccggttgatgttgctacctacttatttaacgaaaagcgcggagctgtgcgcttt
atcgagaaaagtcatggtgttcgcgtattagtgctacctaatccgcatttagattcaccg
cattacgaaatggtgcgtttgaagaaagatgatttaacggacgaacttagctacgcgtta
gtcaaaacacctgagttggaacttgatcctagtattaagcagtttgttgaaacgccaacc
accactgcagtgcaaaaagaagaacccgcactaaaaggattttcagctccacctcctgcc
cctgtagcgccagcccctacagcacagccaaaaacagatgagaagcaacctaagtcgtta
tttgccaaaattgccgacttatttaaatcactattcgctgttgaagaagagccagagccg
aaaaaatcgactcagaaacgtggtaatcaatcacgcaatggccgtggtggtaaacgctca
ggtaataataaccgtcgcggtggtaataggaacaatcgtaatcgtcgccctaatggtgat
aaagacgaagagcgtaagtcacaaaaaactaacgaacgccctaacaaggaaagaaaacct
cgtcgtgctgaaacggcaaatacagaggttaaagaaaaggttgaagagcgccgccaacgt
cgtaatcaaagacgtaaagtgcgtgtgaaagataacaaccaagaaaaaactgagaaccaa
gcggtaaatacccttgatgtggcgaacgaaacagaagctaaagcccctaaggcgccagct
tcaaaaccacagcaagaagaaaaagcacttggtactgcaacagccaaaactgtcgatgat
aagcctattgcagataataatagcgcagaaacatcagccgttagtgacgagaaaaacgtc
gttgataatgcagaaacgaagaaaacgacagaaaaacgtcgtgaaggccgtagtcgtcgc
acaccacgtcaccttcgtacatctggacaaaaacgccgtaaagacgaaactaaaccagaa
accacagcagaagcaagcaaccagcatcctgaagtgacacaagctgaatctcaggagttg
tatagtcatcctgagcctagcccagatccagttgaaagtcgttaccctggtgtagaacag
tcgtctgtcgctaacgaagacaaaacggctccagttgctgaagaaaccaaggttgaagca
caaacgccagtcgtagccgaaactgataaagttgacgttaaagaaggcgaaaacacaaca
acaccttcaacaacagtaactgcaacagtcgaagcaccacaagtaagacaagaatttcaa
caaagcttgcctttagagtcgactgaaacagaagtagaagcgactacagcagctgttgaa
gctgttgaagctgttgaagctgttgaagctgttgaagctgttgaagctgttgaagctgtt
gaagctgttgaagctgttgaagcagaagctaagccaatcgctagctctgagcaaccagta
acaacacctaatagttcgtcagatgcagtaacagaagctattgcgttgtcagaaactacc
gaaggtttaaatcagcagcacaagcctagctttacagcaaaaggccatgccttcgcacca
atggctaaaacacaacctgagcaactcgatctaagccaagcgcttaaaatcgaagctatg
cctgttgaccaacgtttacttataaaaacgtctggtaaggctgctggtggccagaacgca
tcaggtcaaagtcaatcgtcaatgactcgagctgtctaa
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