Saccharobesus litoralis: C2869_09910
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Entry
C2869_09910 CDS
T05408
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cate
Saccharobesus litoralis
Pathway
cate03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cate00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C2869_09910 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cate03021
]
C2869_09910 (rpoC)
03400 DNA repair and recombination proteins [BR:
cate03400
]
C2869_09910 (rpoC)
Enzymes [BR:
cate01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C2869_09910 (rpoC)
Transcription machinery [BR:
cate03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C2869_09910 (rpoC)
DNA repair and recombination proteins [BR:
cate03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C2869_09910 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AWB66723
UniProt:
A0A2S0VR85
LinkDB
All DBs
Position
2801011..2805243
Genome browser
AA seq
1410 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFGGIRIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFESYVVTEAGMTSLERGEMLTEENYLDALEEHGDEFEAKM
GAEAVLALLKEIDLEKEISMMREELPEINSETKRKKITKRLKLMEAFHQSGNKPEWMILD
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKLVEREAPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCSAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILAPANGEPIIVPSQDVVLGLYYMTRDRINAKGEGAVFKDAKEAEKAYRTG
TADLHARVKVRITELVIGEDGSRTEKTEIKDTTVGRAILSLVLPEGLPFALIDQAMGKKP
ISRMLNACYRLLGLKPTVIFADQIMYTGFHYAMLSGASIGINDMVIPDAKKEIIAEAEAE
VTEIQQQFQSGLVTQGEKYNKVIDIWSAANERVAKSMMENLSKETVINRDGEEESQDSFN
SIYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVINAEDCGTHNGFEMRPLIEGGDVVEPLRERVL
GRVVAQDLYKPGTNEILVERNVMLDEKLCDILEENSVDEVIVRSAITCDNDFGVCAKCYG
RDLARGHIVGPGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTTGSIKL
NKAKFVKNIDGNLVITSRSTELTVIDDMGREKERYKVPYGAILNRGDADAVTAGDVVANW
DPHTHPIITEAAGKVQFQDMIEGVTITRQTDELTGLSSIVVIDAKERSTAGKDMRPAIRL
VDANGDDLMIPGTEVTALYYLPGNALVNLEDGAEVGVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKDPAILAEISGTISFGKETKGKKRLVITPTDGSAPHEEMIPKWRQLNVFE
GENVEKGEVIADGPESSHDILRLRGIDAAANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCTILTAGDTDFLEGETAEVARVKIANRELEAQGKIPATFEYQLLGITKASLSTESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQKRAQERQVDVEEV
VEPQVTADEAESALIDALNADLSDDNIGNI
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactaaagtttctcaagcagcaaaataaaactgaagagttcggcgggatc
cgcatcggtttagcgtcacctgatcaaattcgttcttggtcatttggtgaagttaaaaag
ccagaaactattaactatcgtacatttaaacctgaacgtgatggtttattctgtgcgcgt
atatttggtccagttaaagattatgaatgtctttgtggaaaatataagcgtcttaagcac
cgtggtgttatttgtgaaaaatgtggcgttgaagttacgttaactaaagtgcgtcgtgag
cgcatgggtcacattgaattagcaagcccggtagctcatatctggttccttaaatcatta
ccatctcgtattggtttgatgcttgatatgacactgcgtgatatcgaacgtattctttac
tttgaatcatacgttgtgactgaagctggcatgacatcgcttgagcgcggtgaaatgcta
acggaagagaactacttggatgcgttagaagagcacggtgacgaatttgaagctaagatg
ggtgctgaagccgttcttgctttattaaaagagatcgatctagagaaagaaatctctatg
atgcgcgaagagttaccagaaattaattctgaaactaagcgtaagaagatcactaagcgt
cttaaattaatggaagcattccaccaatcaggtaacaagcctgagtggatgatccttgat
gtgttaccggttcttccacctgatttacgcccattagtaccgttagatggtggccgtttc
gcgacttctgatcttaacgacttataccgtcgtgtaatcaaccgtaacaaccgtttgaag
cgtctattagacttagcagctcctgatattatcgtacgtaacgaaaaacgtatgttacaa
gaagcggttgatgctttattagataatggtcgtcgcggtcgcgctattaccggttctaac
aagcgtcctcttaagtcgcttgctgacatgattaaaggtaagcaaggtcgtttccgtcaa
aaccttctaggtaagcgtgttgactactctggtcgttctgtaatcacggtaggtcctact
ttacgtttacatcaatgtggtcttcctaagaagatggcattggaattattcaagcctttc
atctacggaaaattagagcttcgtggtttagctacgacaatcaaagcggctaagaaatta
gtagagcgtgaagcaccagaagtatgggatgtgttagatgaagttatccgtgagcatccg
gtacttctaaaccgtgcacctacacttcaccgtttgggtattcaagcgtttgaacctgtt
ctaattgaaggtaaagctatccatttacacccattagtttgttcagcttataacgctgac
ttcgatggtgaccaaatggcggtacacgtaccgttaacgttagaagcgcaattagaagcg
cgtgcgttaatgatgtcgaccaacaacattcttgcgccagcgaatggtgagccaatcatc
gtaccttcacaggacgttgtattaggtctttactatatgacgcgtgaccgcattaatgcg
aaaggtgaaggcgcagtatttaaagatgcgaaagaagcagaaaaagcctatcgtacaggt
actgctgatttgcatgctcgcgtaaaagtccgtatcactgaattagttatcggtgaagat
ggctcacgtaccgaaaaaacggaaattaaagatacgacagtggggcgtgcaattttatct
ttagtattacctgaaggtttaccatttgcacttatcgaccaagcgatgggtaagaagcct
atctcgcgtatgcttaacgcttgttaccgtttattaggcttaaagccgaccgttattttt
gctgaccaaatcatgtacaccggtttccattacgccatgttatcaggcgcgtcaatcggt
attaacgatatggttatccctgatgcgaagaaagagatcattgcagaagctgaagctgaa
gttactgaaattcagcaacagttccaatctggtcttgtaacgcaaggtgagaaatacaac
aaagtcatcgatatttggtcagcagcgaacgagcgtgttgctaagtcgatgatggaaaac
ttgtcgaaagagacagttatcaaccgtgatggtgaagaagaaagccaagatagctttaac
agtatctacatgatggccgactcaggtgctcgtggtagcccagctcagatccgtcagtta
gcgggtatgcgtggtctaatggctaagccagatggctcaatcattgaaacgcctatcgtc
gctaacttccgtgaaggtctaaacgtactacagtacttcatctcaactcacggtgcgcgt
aaaggtcttgccgatacggcacttaagacggctaactcgggttacctaactcgtcgttta
gttgatgttgctcaagatttagttatcaatgctgaagattgtggtactcataacggtttc
gaaatgcgtccgcttattgaaggtggtgacgttgttgaacctttacgtgaacgtgtatta
ggtcgtgttgtagcacaagacttatacaagccaggtacgaatgaaattctagttgagcgt
aacgttatgcttgacgaaaaactgtgtgatattttagaagaaaactcagttgatgaagtt
atcgtacgttcagctattacttgtgataacgactttggtgtttgtgctaaatgttacggt
cgtgacctagctcgtggtcatattgtcggtcctggtgaagctgttggtgttatcgctgct
cagtcaatcggtgagccgggtacacagcttaccatgcgtaccttccacattggtggtgcg
gcatctcgagcgtctgcagaaaacagtgttcaagttaagactacgggttcaatcaagctt
aacaaagcgaaatttgttaagaacattgatggtaacttagttatcacttcacgttctaca
gagctaaccgttatcgacgacatgggtcgtgagaaagagcgttataaagtgccttacggt
gcaatattaaaccgtggcgatgctgatgcagtaaccgctggtgatgtggtagctaactgg
gatccgcatacgcatccaattatcacagaagctgcaggtaaagttcagttccaagacatg
attgaaggtgtgactattactcgtcaaacagatgagttaactggtctttcttctattgtg
gttattgatgctaaagaacgcagtaccgctggtaaggacatgcgtccagctattcgttta
gttgatgctaatggcgatgacttaatgatcccaggtactgaagtgacagcactttattac
ttacctggtaacgcacttgttaaccttgaagatggtgcggaagtgggtgtgggtgatgca
ttagcacgtataccacaagaaagctcgaaaacacgtgatattaccggtggtcttccacga
gttgctgacttattcgaagcgcgtaagccaaaagatccagctatcttagctgagatttca
ggtacgatcagctttggtaaagagactaaaggtaagaagcgtttagttatcacacctacc
gatggttctgctccgcatgaagagatgatccctaaatggcgtcaacttaacgtgttcgaa
ggtgagaacgttgaaaagggtgaagttatcgctgatggccctgagtcatcacatgatatc
ttacgtttacgtggtattgatgctgctgctaactatatcgttaatgaagtacaagacgta
taccgtttacaaggtgtaaaaattaacgataagcacatcgaagttatcattcgtcagatg
ctacgtaagtgtactatcttgactgctggcgatactgatttcttagaaggtgaaacggct
gaagtggctcgcgttaagatcgctaaccgcgaacttgaagcgcaaggtaagatcccagca
acgtttgaataccaactgttaggtattactaaagcgtcactttcaacagaatcgtttatc
tctgctgcttcattccaagaaacaacacgtgttcttactgaagctgcggtaagtggtaag
cgtgatgaattacgtggccttaaagagaacgtaattgttggtcgcttaatccctgcaggt
acaggttttgcgtatcatcagaagcgtgctcaagagcgtcaagttgatgttgaagaagtt
gtagagccgcaagtgactgccgatgaagccgaaagtgcactaattgatgcattaaatgcg
gatttatcagatgacaatattggcaatatctaa
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integrated database retrieval system
