Catellatospora sp. IY07-71: CS0771_16920
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Entry
CS0771_16920 CDS
T07191
Symbol
lig_1
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cati
Catellatospora sp. IY07-71
Pathway
cati03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cati00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CS0771_16920 (lig_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cati03400
]
CS0771_16920 (lig_1)
Enzymes [BR:
cati01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CS0771_16920 (lig_1)
DNA repair and recombination proteins [BR:
cati03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CS0771_16920 (lig_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BCJ72148
UniProt:
A0A810NJM1
LinkDB
All DBs
Position
1885740..1886477
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AA seq
245 aa
AA seq
DB search
MIDYYHRIASVILPHLRDRALTRIRFPDGADRPGFFEKNAPAKKPAWIPTSPDGLIICNE
IAALVWLANLAALELHTHQWLVGAPGPDRVVFDLDPGPGTGLDECRAVALALRDRLAVDG
RPAFPKTSGRKGMQVSSTFSGSFDEVAEYARGIAAEFAAAAKGLITDQMAKELRPGKVFI
DWSQNNQAKTTVCVYSLRAGPTPTVSAPLTWDEVAKGDFIAASFGPAEVLDRVAHLGDLH
AGLLG
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgactactaccaccggatcgcctcggtgatcctgccgcacctgcgcgaccgcgcg
ctgacccgcatccgcttccccgacggcgccgaccgccccggcttcttcgagaagaacgcc
ccggccaagaagcccgcctggatcccgacctcgcccgacggcctgatcatctgcaacgag
atcgccgccctggtctggctggccaacctcgccgcgctcgaactgcacacccaccagtgg
ctggtcggcgcccccggccccgaccgcgtcgtcttcgacctggaccccggccccgggacg
ggactggacgagtgccgcgcggtggccctggccctgcgcgaccgcctcgccgtcgacggc
cgcccggccttccccaagacctcgggccggaaaggcatgcaggtcagcagcaccttctcg
ggcagcttcgacgaggtcgccgagtacgcccgcggcatcgcggccgagttcgccgccgcg
gcgaagggcctgatcaccgatcagatggccaaggaactgcgccccggcaaggtcttcatc
gactggagtcagaacaaccaggccaagacgacggtatgcgtctactccctgcgcgccggt
cccacacccaccgtctccgctcccctgacctgggacgaggtggccaaaggtgacttcatc
gccgcctccttcggccccgccgaggtcctcgaccgcgtcgcccacctcggcgatctccac
gccggcctgctcggctga
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