Corynebacterium atrinae: CATRI_01885
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Entry
CATRI_01885 CDS
T09346
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
catr
Corynebacterium atrinae
Pathway
catr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
catr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CATRI_01885 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
catr03021
]
CATRI_01885 (rpoC)
03400 DNA repair and recombination proteins [BR:
catr03400
]
CATRI_01885 (rpoC)
Enzymes [BR:
catr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CATRI_01885 (rpoC)
Transcription machinery [BR:
catr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CATRI_01885 (rpoC)
DNA repair and recombination proteins [BR:
catr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CATRI_01885 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WJY62482
LinkDB
All DBs
Position
373508..377518
Genome browser
AA seq
1336 aa
AA seq
DB search
MFDVNLFEELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIITSVDEEARHNDQSTLEADMLLEKKDVEADAEAEIAERAAKLEED
LAELEAAGAKADARRKVQSAADKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETV
YEELVDRYEEYFTGGMGAEAIQTLIRNFDLDAEAEELRTIINEGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLDCVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLTMGKSENEIGGQ
GAYKPADENGPEQGVYSSYAEAIMARDLGVLGLQAPIHVRISHLRPPADIEAEQFPDGWE
QGQTWMAETTLGRVMFNELLPWNYPYLEGVMVRKGGGAGNILLGDVINDLAATYPMITVA
QTMDKMKDAGFYWATRSGVTIAMSDVLVLPNKEEILERYEAEAREIEDKYWVKGALRERD
RYDRLVELWQDATNQVGKAVEELYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG
DYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRED
DCGTRQGVRVPVAIEVKDAEGTVTGFARHPLVETSVSGRVLATEVNGADGEQLYAAGDEL
TEARIDELVLNGVTEVKVRSVLTCQTPTGVCAKCYGKSMASGHLVDIGEAVGIVAAQSIG
EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNASPIAEFDGTVHLEDDGNFYRL
TLTSDDGSEEKVYEKLSKRQGLAQIRVAMENNAGVFIERTLRDGDHLKLGERILRGPADP
HDVLRVLRRRGVEKHLIDEVQAVYRTQGVAIHDKHIEIIIRQMLRRGTVIEAGSTDFLPG
TLVDLSEARRVNAAIRAEDGQPAELRDQIMGITKASLATESWLSAASFQETTRVLTDAAI
NRRSDQLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGY
AEFTGASVPLDEDFQL
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgacgtaaacctcttcgaagagctccgcatcggcctggccactgccgacgacatt
cgccgctggtccaagggcgaggtcaagaagccggagaccattaactaccgcaccctcaag
ccggagaaggacggcctcttctgcgagcgcatcttcggccctacccgcgactgggagtgt
gcctgcggtaagtacaagcgtgtccgttacaagggcatcatctgtgagcgctgtggcgtc
gaggtgaccaagtccaaggtccgtcgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgttccttcgcgcctgggttaccttctggacctg
gctccgaaggacctggagcgaatcatctacttcgctgccaacatcatcacctccgttgac
gaggaagctcgccacaacgatcagtccaccctcgaggcagacatgctgctggagaagaag
gacgtcgaggctgacgccgaggctgagatcgctgagcgcgctgccaagttggaggaggac
ctcgctgagctcgaggccgccggtgccaaggccgacgcccgtcgcaaggtgcagtccgcc
gccgacaaggagatgcagcacatccgcgagcgcgcggagcgcgagatcgaccgccttgag
gagatctggcagaccttcatcaagcttgctcccaagcagatgatcatcgatgagaccgtg
tacgaagaactcgtcgaccgttacgaggagtacttcaccggcggcatgggtgctgaggct
atccagacgctcatccgcaacttcgacctcgacgccgaggccgaggagctgcgcacgatc
atcaacgagggcaagggccagaagaagatgcgcgccctcaagcgcctcaaggtcgttgcc
gcgttccagcgctctggcaacgaccccgctggcatggtcctcgattgcgttccggtgatc
ccgccggagctgcgcccgatggtccagcttgatggtggacgtttcgccacctccgacctc
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgcctcaagcgcatgatcgatctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtctgtcgacgcc
ctctttgacaacggtcgtcgcggccgcccggtcaccggaccgggcaaccgcccgctgaag
tcgctgtctgacctgctcaagggtaagcagggtcgttttcgtcagaacctgctgggtaag
cgagtcgactactctggccgttcggtcattatcgttggcccgcagctcaagctgcacgag
tgtggtctgccgaagctcatggctctcgagctgttcaagccgttcgtgatgaagcgactg
gtggaaaacgagtacgcgcagaacatcaagtccgctaagcgcatggtcgagcgtcagcgt
cccgaggtgtgggacgtgctcgaagaggccatctccgagcaccccgtcatgctcaaccgt
gcacctaccctgcaccgcctgggcatccaggccttcgagccgaagctcgtcgagggtaag
gccattcagctgcacccgctcgcgtgtgaagccttcaacgccgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggcccaggccgaagctcgcgtgctcatgctc
gcctcgaacaacatcctgtccccggcctccggcaagcccttggctatgccgcgcctggac
atggtcacgggtctgtacttcctgaccatgggtaagtccgagaacgagatcggtggccag
ggcgcctacaagccggccgatgagaacggtccggagcagggcgtctactcgtcctacgcc
gaggccatcatggctcgcgacctgggtgtcctaggtctgcaggctccgatccacgtccgg
atctcgcacctgcgtcccccggctgacatcgaggctgagcagttccccgacggttgggag
cagggtcagacctggatggcggagaccactcttggtcgcgtcatgttcaacgagctcctg
ccgtggaactacccctaccttgagggcgtcatggtccgtaagggtggcggtgccggcaac
atcctgctcggcgacgtcatcaacgacctcgcagccacctacccgatgatcaccgtcgcc
cagacgatggacaagatgaaggacgctggcttctactgggccacccgttccggcgtcacc
atcgccatgtccgacgttctcgtcctccccaacaaggaggaaatcctcgagcgttacgag
gccgaggcccgcgagatcgaggacaagtactgggtcaagggtgctttgcgtgaacgcgac
cgctacgaccgcctagtcgagctgtggcaggacgcaaccaaccaggtgggtaaggccgtc
gaggagctctaccccgacgacaacccgattccgatgatcgtgaagtccggtgccgccggc
aacatgcgtcagatctggaccctggctggcatgaagggcatggtcgtgaattccaagggt
gactacatcacccgaccgatcaagacctccttccgcgaaggcctctccgttctcgagtac
ttcaacaactcgcacggttcccgaaagggcctggccgataccgcgctgcgtaccgcagac
tccggctacctgacccgtcgtctcgtcgacgtggctcaggacgtcatcgtccgcgaggac
gactgtggcacccgccagggcgttcgcgtcccggtcgccatcgaggtcaaggacgccgaa
ggtaccgtcaccggcttcgcccgccaccccttggtcgagacgtccgtctccggtcgagtc
ctggctaccgaggtcaacggtgccgacggcgagcagctctacgccgctggcgacgagctg
accgaagcgcgtatcgacgagctcgtgctcaacggtgtcaccgaggtcaaggtccgttcc
gtcctcacctgccagacgcctaccggcgtctgcgccaagtgctacggcaagtccatggca
tcgggtcacctcgttgatatcggcgaagcagtcggcattgtcgccgcccaatcgatcggc
gagcccggtacccagctgaccatgcgtaccttccaccagggtggtgtcggtggtgacatc
accggcggcctcccgcgtgtccaggagctgttcgaggcccgcgtgcccaagaacgcctcc
ccgattgcggagttcgacggcacggtccacctcgaggatgacggcaatttctaccggttg
acgctgacctccgacgatggttccgaggagaaggtctacgagaagctgtccaagcgacag
ggcctcgcccagatccgcgtcgccatggagaacaacgctggcgtgttcatcgagcgcacc
ctgcgcgatggtgaccacctcaagctgggcgagcgcatcctgcgcggacccgccgacccg
cacgatgttctgcgggtgctgcgtcgtcgcggcgtcgaaaagcaccttatcgacgaagtg
caggccgtctaccgcacccagggtgtggccatccacgacaagcacatcgagatcatcatt
cgccagatgctgcgccgcggtaccgtcatcgaagccggctccaccgacttcctgccgggc
accctggttgacctgtccgaggcacgtcgcgtcaacgccgcgatccgcgccgaggacggc
cagcccgccgagctgcgcgaccagatcatgggcatcaccaaggcctcgctggctacggag
tcttggctgtccgccgcatcgttccaggagaccactcgtgtcctgaccgacgctgcgatc
aaccgtcgctccgaccagctcatcggcctgaaggagaacgtgatcatcggtaagctgatc
ccggccggtaccggtatctcccgctaccgcaacatctccgtcaagccgaccgaggctgcc
cgcaacgccgcttactcgatccccacctacggggactcgatctacggtgatgacggctac
gccgagttcaccggcgcatccgtgccgctggacgaggatttccagctctag
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