Corynebacterium atrinae: CATRI_04980
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Entry
CATRI_04980 CDS
T09346
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
catr
Corynebacterium atrinae
Pathway
catr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
catr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CATRI_04980 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
catr03019
]
CATRI_04980 (deaD)
03009 Ribosome biogenesis [BR:
catr03009
]
CATRI_04980 (deaD)
Enzymes [BR:
catr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CATRI_04980 (deaD)
Messenger RNA biogenesis [BR:
catr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CATRI_04980 (deaD)
Ribosome biogenesis [BR:
catr03009
]
Prokaryotic type
rRNA helicases
CATRI_04980 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
adh_short
Motif
Other DBs
NCBI-ProteinID:
WJY63089
LinkDB
All DBs
Position
989148..991313
Genome browser
AA seq
721 aa
AA seq
DB search
MSITDNATGGVNEPDDLSTSESQENPQGDAASAASTATGPLTVEDVIDPDVPAQGDKDTR
DADTSEATGSETEDFSDNDDTINTAADMAVDASEDAGDDQDDEHGFANLGLPSAVLNAVK
KVGYETPSAIQAQTIPVLMEGNDVVGLAQTGTGKTAAFALPILARIDMQDRSPQALVLAP
TRELALQVADSFQSFADHLGKISVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRIIDHLEK
GSLDISRLRFLVLDEADEMLNMGFQDDVERILEDTPEDKQVALFSATMPNGIRKISKQYL
QDPREISVKSETRTATNITQRFLNVAHRNKLDAITRILEVTEFEAMIVFVRTKHETEEIA
EKLRARGFSAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAARGLDVDRISHVFNFDI
PNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRAIERATNAPLTEMELPTVDEVNES
RKGKFMDSITESLESKQIDLFRGMIKAYAEEHDVPVEDIAAALASQAQAGSDFLMKEAPP
EKRRERNDRDRGDRGGRFDRDRGGRFDRDDRGGDRGSRFDRDGDFSTYRLAVGKRHNVRP
GAIVGALANEGGLTSKDFGRITIAVDHTLVELPKDMDKSVLGRLSDTRISGQLINIEPDS
GGRPPRRFERDDRGGRGGDRGGFRGGRDRDDRGGRGGYRGNRDDRGGRDRNDRGGRGGWR
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcgtaaatgagccggatgacctaagcacgtcg
gaatctcaggaaaacccgcaaggtgacgcagcttctgctgcctccaccgccaccgggccg
ctgaccgtcgaggatgttattgatcccgatgttccggcccagggcgacaaggacaccagg
gacgcggatacttctgaggccaccggctccgagaccgaagatttctcggacaacgatgac
actattaataccgctgccgacatggcagtagacgcctcagaagacgctggcgatgaccag
gatgacgaacacggtttcgccaacctcggtctgccctccgccgtcctcaacgcggtgaag
aaggtcggttacgagaccccttccgccatccaggcgcagactatcccggtcctcatggaa
ggcaacgacgtcgtcggccttgcccagaccggtactggcaagaccgcagccttcgcgctg
ccgattcttgcccgcattgacatgcaggatcgctcgccccaggcgctggtccttgctccg
acccgtgagctcgcgctccaggtcgccgattccttccagtccttcgctgaccacctcggc
aagatcagcgtcctgccgatctacggtggccaggcctacggtatccagctctccggcttg
cgccgcggcgctcagatcatcgtcggcacccccggtcgtatcatcgaccacctggaaaag
ggttccctcgacatctcccgcctgcgcttcctcgtcctcgatgaggccgacgagatgctc
aacatgggcttccaagacgatgttgagcgcatcctggaggacaccccggaggacaagcag
gtcgctctgttctctgcgacgatgcccaacggcatccgcaagatctccaagcagtacctg
caggacccgcgcgaaatctccgtcaagtcggagacccgcacggccaccaacatcacgcag
cgcttcctcaacgtcgcgcatcgcaacaagctcgacgcgatcacccgcatcctcgaggtc
accgagttcgaggccatgatcgtcttcgtgcgcaccaagcacgagaccgaggaaatcgcc
gagaagctgcgcgcccgcgggttctccgctgccgccatcaacggcgacatcgcgcagaac
cagcgtgaacgcaccgtcgatcagctcaaggacggtcgcctggacatcctggttgccacc
gacgtcgccgcccgaggccttgacgtcgaccgcatcagccacgtgttcaacttcgacatc
ccgaacgacaccgagtcctacgttcaccgcatcggccgcaccggccgtgcgggtcgcacg
ggcgaggcgatcctcttcgtcaccccgcgtgagcgtcgtatgctgcgcgccatcgagcgc
gccaccaacgcgccgctcaccgagatggaactgccgacggtcgatgaggtcaacgaatcc
cgcaagggcaagttcatggactcgatcaccgagtccctggagtccaagcagatcgacctg
ttccgcggcatgatcaaggcttacgccgaagaacacgacgttcccgtcgaggatatcgcc
gcagctctggcctcccaggctcaggctggcagcgacttcctcatgaaggaagccccgccg
gagaaacgccgcgagcgcaacgaccgcgatcgcggcgaccgtggtggtcgcttcgaccgt
gaccgtggcggccgtttcgaccgcgatgatcgtggcggagaccgtggctcccgcttcgac
cgcgacggtgacttctccacctaccgtcttgccgtgggcaagcgccacaacgtacgccca
ggtgccatcgtcggcgccctggccaacgagggtggcctcacctccaaggacttcggccgc
atcaccatcgccgtcgaccacaccctggtcgaactgccgaaggacatggacaagtcggtc
ctgggccgcctgtccgatacccgcatctccggtcagctcatcaacatcgagcccgactcc
ggtggacgccccccgcgtcgctttgagcgcgacgaccgtggtggtcgtggcggagaccgc
ggtggtttccgcggtggacgtgaccgcgacgatcgtggtggacgcggtggataccgtggc
aaccgcgatgaccgtggcggacgcgaccgcaatgaccgcggtggacgtggcggttggcgc
gactag
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