Corynebacterium atrinae: CATRI_05235
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Entry
CATRI_05235 CDS
T09346
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
catr
Corynebacterium atrinae
Pathway
catr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
catr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CATRI_05235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
catr03021
]
CATRI_05235
03019 Messenger RNA biogenesis [BR:
catr03019
]
CATRI_05235
Transcription machinery [BR:
catr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CATRI_05235
Messenger RNA biogenesis [BR:
catr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CATRI_05235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
WJY63139
LinkDB
All DBs
Position
1048661..1050592
Genome browser
AA seq
643 aa
AA seq
DB search
MTTTDTTPAAGTAAGGSDQPNLAPLKLPELRKLAADRGLKGTSGLRKGDLIAAIQSGSVP
AKARAEKADTPKAAAPTKEAPQAAAPAKQDEPAQSGDSQGSQENSQDGSDEGRYESRSAA
RRARRNRARHSQQDSQDSGDKREEQQQDSRPEKRDNAVHADSAVEDNSNNSNADDQRENR
EGRDNRGNRNNRNSRNDRNERNERNDRNDRNEDGEGRRGRRNRRNRRNRGGGSDFNDNNQ
QGNQQQDQHNDGGGELQDVAGILDILDNNAAFVRTTGYQPSSADVYVNNQLVRRFGLRSG
DAVTGQVKMGAQQTHGQGRNRQKYNQLVRVETVNGLSVEEARNRPEFAKLTPLYPNQRLR
LETDPRILTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQNIANAISTNNPECYLMVVLV
DERPEEVTDMQRSVKGEVIASTFDRPPSEHTAIAELAIERAKRLVEQGKDVVVLLDSITR
LGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDT
VIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLAPEEVRIMHKLRRILSA
LDPQQAIDLLIKQLKKSKSNGEFLMQVASSAPMAADRDEEDYS
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
gtgaccacaacggacaccacccccgccgccggtaccgccgcgggaggaagcgaccagccc
aacctggcgcccctcaagctccctgagctgcggaaactcgcagccgataggggccttaag
ggaacctccgggctgcgcaagggggacctcatcgccgcgatccaatcgggatccgtgcca
gcaaaggcccgcgctgagaaggccgacacgccgaaggctgcggcgccgacaaaggaagca
ccccaggccgctgcgcctgcgaagcaggacgagcccgcccagtccggcgatagccagggc
tcccaagagaactcacaggatggctccgatgagggccgctatgagtcgcgttccgctgcc
cgccgggcccgacgcaaccgcgcccgccacagccagcaggattcccaggactccggggat
aagcgcgaggagcagcagcaggactctcggccggaaaagcgtgacaacgccgtccatgcc
gatagtgctgtagaagataactccaacaactcaaacgccgacgatcagcgcgagaaccgc
gagggccgggacaaccgcggcaaccgcaataatcgcaacagccgcaacgaccgcaacgag
cggaatgagcggaatgatcgcaacgaccggaatgaggacggcgaaggccgccgcggtcgc
cgcaaccgtcgcaatcgtcgcaaccgtgggggcggaagcgacttcaacgacaacaatcag
cagggtaaccagcagcaggatcagcacaatgacggcggcggggagctgcaagatgttgcg
ggcatcctcgatatcctcgacaacaatgccgcgttcgtccgcaccacgggctaccagcct
tcttccgcggacgtctacgtcaacaaccagttggtccgccgcttcggcctgcgttccggt
gacgccgtcaccggccaggtgaagatgggtgctcagcagacccatggccaggggcgtaac
cgccagaagtacaaccagctcgtccgggttgagacggtcaacggcctgtcggtcgaagag
gctcgtaaccgtccggagtttgccaagctgactccgctgtacccgaaccagcgtctgcgc
ctggagacggatccccggattctcaccacccgcgtcattgacctcatcatgccgattggt
aagggccagcgtgcgcttatcgtctccccgccgaaggccggtaagacgacgatcatgcag
aacatcgccaacgcgatctcgacgaacaacccggagtgctacctcatggtcgtgctcgtc
gatgagcgccccgaagaagtgacggacatgcagcgttccgtcaagggtgaggtcattgcc
tcgaccttcgaccgcccgccgtcagagcacactgccatcgcggagctggccattgagcgc
gcgaagcgcctcgtggagcagggcaaggacgtcgtagtcttgctcgactccatcacccgt
ttgggtcgtgcgtacaacaactcctccccggcgtcgggccgcatcctctccggtggtgtg
gattccaacgccctgtacccgccgaagcgtttcctcggtgctgcccgcaacatcgaaaat
ggcggttcgctgacgatcatcgccaccgccatggtggagaccggttccgctggcgacacg
gttatcttcgaggagttcaagggcaccggcaacgccgagctcaagctggatcgcaagatc
tcggagcgccgggtgttcccggccgtggatgtcaacccgtcgggtacccgcaaggacgag
ttgttgctcgccccggaggaggtccgcatcatgcacaagttgcggcgtatcctctcggca
ttggacccgcagcaggctattgacttgctgattaagcagctgaagaagtcgaagagcaat
ggcgagttcctcatgcaggttgcatcttccgctccgatggctgcggatagggacgaggag
gactattcctaa
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