Corynebacterium atrinae: CATRI_09670
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Entry
CATRI_09670 CDS
T09346
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
catr
Corynebacterium atrinae
Pathway
catr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
catr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CATRI_09670 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
catr03019
]
CATRI_09670 (rne)
03009 Ribosome biogenesis [BR:
catr03009
]
CATRI_09670 (rne)
Enzymes [BR:
catr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CATRI_09670 (rne)
Messenger RNA biogenesis [BR:
catr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CATRI_09670 (rne)
Ribosome biogenesis [BR:
catr03009
]
Prokaryotic type
rRNA processing factors
CATRI_09670 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WJY64002
LinkDB
All DBs
Position
complement(1977661..1980606)
Genome browser
AA seq
981 aa
AA seq
DB search
MADSTDPTVSNEPAEQEQAPKKRRVARKAVKKTAKKTTKKTTKKAAKKAVKKAPKKAPAL
AFPDFDREQLGAKVRVHALAKQLSLTSKELISALDGMGLKKVAQSTISREEALALLDALA
APDTKPETPEPEAPAEPEEKIRIRVRKNVENEIHQIEEKVEADLAAVVEEHIDEEPLEDI
EPAITPAPESIEGSAVEQFTPVFMPPGAATETPVEEETSNAASRRRRRGRRGASRGRGAE
EVEVVEAEEAAEVAEELPDEPTALRGSTRLEAQRRRRTELREEGRKKRHIVSQAEFLARR
ESVERTMVVRERERHDSPGLVTQVGVLEDELLVEHFVTSEAQASMIGNIYLGRVQNVLPS
MEAAFIDIGQGRNGVLYAGEVDWKSAGLGGRSRRIEQALKSGDQVLVQVSKDPLGHKGAR
LTTQISLAGRYLVYVPGGRSAGISRKLPGPERARLKEILTKVVPGQGGAIIRTAAEGVSE
EAIAADVNRLHSLWEDIRARADKETHSKGSKPITMYEEPNMLVKVVRDLYNEDFSQLVVD
GGRAWNTVHAYVQSVAPDLLDRVVKYDRAAHGGVDAFEHYRIDEQIQKALSEKVWLPSGG
TLIIERTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDMGGMIVVDFI
DMVLPENQELVLRRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFSTECEHCA
GRGIILHEDPVEEPHDHHEDKRAERRRKPEQDPTRHPAAVAMQEEDEEEHASIEELAAAV
VVDEPQEKPKRSRRSRRSAKAEKVEDSFEKIVSDAVELADAEDPEEPSGASYVPAEDTGE
KTFQQAVEEFETSPRRRRKTRGNSRSDRRPQPEDFPGSASTAPAAQLEDEKERSDARRSR
RRTTRSNRPNRAVAEQEAPQQEEKSEETTVVRRTRGRRRVVRRTTTSEIPAQAPQADVDK
QEAPKRASRGRRRVTRRTSAR
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
gtggctgattccacagatcccaccgtgtccaatgaacctgcggagcaggagcaggcgccg
aagaagcgccgggtagctcgcaaagcggtgaagaagaccgccaaaaagaccaccaagaag
accactaagaaggccgctaagaaagcagtaaagaaggccccgaagaaggcacccgcgctt
gctttccctgatttcgatcgggagcagctgggcgcgaaggtgcgcgtccatgccttggcc
aagcagctgagcttgacttcgaaggaactcatttccgcgctggatgggatggggctgaag
aaggtggcgcagtccacgatctctcgcgaggaggcgctggcgttgttggatgccctcgcc
gcgccggacactaagccggaaaccccggagccggaggccccggcggagccggaggagaag
atcaggattcgcgttcgtaagaatgtggaaaacgagattcaccagatcgaggagaaggtc
gaggctgatcttgccgcggtcgtcgaggagcatatcgacgaggagccgctggaggacatt
gagcccgcgatcactcccgcgccggagagcattgagggttctgccgtcgagcagttcacg
cccgttttcatgccgccgggtgccgcaacggagacgcctgtggaggaggagacctccaac
gctgcttctcgacgccgccgtcgcggccgccgcggcgccagccgcggtcgcggggccgaa
gaggttgaggtagtcgaggctgaagaagccgctgaagttgcggaagagcttcccgacgag
ccgactgctctgcgtggatccactcgcctagaggcgcagcgccgccgccgcactgagctg
cgcgaggaggggcggaagaagcgtcacatcgtctcgcaggcggagttcttggcgcgtcgc
gagtcggtcgagcgcaccatggtcgtgcgggagcgcgagcggcacgatagcccaggcttg
gttacccaggtgggtgtgctggaggatgagctgctcgttgagcatttcgtgacgtcggag
gcgcaggcctcgatgatcggcaatatctacctcggacgggtgcagaacgtgttgccgagc
atggaggcagctttcattgacatcgggcagggccgcaatggtgtgctctatgccggtgag
gtcgattggaagtccgcgggcctcggtgggcgtagccgccggatcgagcaggctctgaag
tctggtgatcaggtgctcgtgcaggtgagcaaggatccgctcggccataagggtgctcgg
ttgaccacgcagatttcgctggcgggtcgctacctcgtttatgtgccgggtggccgcagc
gcgggtatttctcgcaagcttcccgggccggagcgggctcgtttgaaggagatcctcacg
aaggtcgtgcccggccagggcggggcgatcattcgtaccgcagctgagggtgtgtcggag
gaggcgatcgccgccgacgtcaatcgcctgcattcactgtgggaggacatccgcgcccgt
gcggataaggagacccattccaagggctcgaagccgatcacgatgtacgaagagccgaat
atgctcgtcaaggtcgtgcgcgacctctacaacgaggacttctcgcagctggtcgtcgat
ggtggccgtgcgtggaacactgttcacgcttatgtgcagtccgtggctccggatctgctc
gaccgagtggtcaagtatgaccgggccgcacacggcggggttgatgccttcgagcactac
cgtattgatgagcagatccagaaggccctctcggagaaggtgtggctgccgtcgggtggc
acgttgatcatcgagcgcacggaagccatgacggtcgttgacgtcaacaccggcaagttc
accggttccggtggcaacctcgaagagaccgtcacgcgtaacaaccttgaggccgccgaa
gaaatcgtccggcagatgcgactgcgtgacatgggtggcatgatcgtcgtcgacttcatc
gatatggtcctgccggagaaccaggagctcgtgctgcggcgcctcaaggaggcgctgggt
cgcgatcgcacgcgtcaccaggtttccgaggtcacgtccctcggcctggttcagatgacc
cgcaagcgcttgggcactggcctgctggagaccttctctaccgagtgtgagcattgtgcc
ggccgcggcatcatcctgcacgaggatccagtggaggagccgcacgatcatcacgaggac
aagcgggctgagcgccgccggaagccggaacaagatccgactcgtcacccagctgccgtg
gctatgcaggaagaagacgaggaggagcacgcttccatcgaggagctggctgccgccgtc
gtcgtagacgagccgcaggagaagccgaagcgttcgcgtcgttcccgccgcagcgccaag
gcggagaaggtggaggacagcttcgagaagattgtgtccgacgccgtggaactggcggac
gctgaagatccggaggagccgtcgggtgcctcctacgtgcccgccgaggacacgggagaa
aagaccttccagcaggccgtggaggagtttgagacctcgccgcgccgacgtcgcaagacg
cgtggcaactcccgctccgatcgtcgcccgcagccggaggacttcccaggttccgcttcc
accgcaccggccgcccagcttgaagatgagaaagagcgttccgacgcccgccggtcccgc
cgccgcaccacccgcagcaaccgcccgaaccgggcggtcgccgagcaggaagcacctcag
caagaggagaagtccgaggagaccacggttgttcggcggacgcgagggcgccgacgggtc
gtgcgacgcacgaccaccagtgagatccctgcgcaggcccctcaggcggacgtcgataag
caagaggcgccgaagcgtgcctctcgtgggcgccgccgagtgacccggcggacatccgct
cgttag
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