Catenovulum adriaticum: OLW01_02235
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Entry
OLW01_02235 CDS
T08659
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
catt
Catenovulum adriaticum
Pathway
catt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
catt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OLW01_02235 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
catt03021
]
OLW01_02235 (rpoC)
03400 DNA repair and recombination proteins [BR:
catt03400
]
OLW01_02235 (rpoC)
Enzymes [BR:
catt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OLW01_02235 (rpoC)
Transcription machinery [BR:
catt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OLW01_02235 (rpoC)
DNA repair and recombination proteins [BR:
catt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OLW01_02235 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WAJ70653
LinkDB
All DBs
Position
503258..507481
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDRIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVTEPGMTSLERSQLLNEEDYLDALEEYGDEFDAKM
GAEAILGLLDNIDLEQEIKMMREELPETNSETKRKKITKRLKLMEAFHQSGNDPRWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKLVEREAPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNGLGEGAVFKDPKEAEKAYRTN
NVELHSRVKVRITETLTNDAGEKETATRIVDTTAGRAILSLILPEGMSFDLINQPMGKKQ
ISRLLNGCYRQLGLKDTVIFADQIMYTGFHFAMLSGASVGIDDMVIPDAKKDIVDAAEAE
VTEIQEQFQSGLVTAGEKYNKIIDIWSSANERVAKSMMDNLSKEVVKNAKGEDEEQDSFN
SIYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDMVVLSEDCGTEDGTVMRPLIEGGDVVEPLRERVL
GRVVAEDVYLPNSNEVLIPRNVMIDEALCDQLEINSIDEVKVRSVITCDNDFGVCAQCYG
RDLARGHIINQGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSIQVKTDGSIKL
ARAKFVTNSDGKIVITSRSSELTVIDELGRQKERYKVPYGAVMSKADGEAVSAGEVIANW
DPHTHPIITEVEGKVQFADMVDGVTITRQTDELTGLSSIVVIDPKDRTGSGKEMRPAIRL
VDEKGQAVNMSGTDMPAQYFLPGNALVNLEDGAQVQSGDAIARIPQESSKTRDITGGLPR
VADLFEARKPKDPAILAEMSGTVSFGKETKGKRRLIITAEHGAVQHEEMIPKWRQLNVFE
GEQVEKGEVIADGPESPHDILRLRGTLDVCTYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKCVITGAGDSQFLESETAEVAAVNIGNRELEAQNKEPAKFEYQLLGITKASLSTESFI
SAASFQETTRVLTEAAVSGKTDDLRGLKENVIVGRLIPAGTGYAYHQKRAASRMKVALPE
VETQVTADEAEKALTDALNADFSGNQD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactgaagtttctcaagcaacagaacaaaacagaagaattcgatcgtatt
cgaattggtttatcgtcacctgacatgattcgttcatggtcattcggtgaagtgaaaaaa
cctgaaactattaactaccgtacgttcaaacctgaacgcgacggcttgttctgtgcgcgt
atttttggcccgattaaagactacgaatgtttgtgtggtaaatacaagcgtttgaagcac
cgtggtgtaatttgtgaaaagtgtggcgttgaagttaccttgaccaaagtacgtcgtgag
cgcatgggtcacattgaattggcaagcccggttgcacatatttggttcttaaaatcatta
ccgtctcgaatcggcttaatgcttgatatgacgttacgtgatattgaacgtgtactttat
tttgaatcatttgtagtcactgagcctggcatgacttcgctagagcgcagtcagttatta
aatgaagaagattaccttgatgcgttagaagaatacggtgacgaatttgacgctaaaatg
ggtgctgaagccattttagggttattggataacatcgatcttgaacaagaaatcaagatg
atgcgcgaagagttaccagagacaaactctgaaactaagcgtaaaaaaattactaaacgt
cttaaactaatggaagctttccatcagtcaggcaatgatcctcgctggatgatcatgaca
gttttacctgttttgccgcctgatttacgtccattagtaccgctagacggcggccgtttt
gcaacgtctgatttgaatgatttatatcgccgtgtgattaaccgtaataaccgtttgaaa
cgtttattagatttagcggcacccgatattatcgttcgtaatgaaaaacgtatgttgcaa
gaagcggttgatgcattattagataatggtcgacgtggtcgtgcaattacgggttctaac
aagcgtcctttaaaatctttggctgatatgatcaaaggtaaacaaggtcgtttccgtcaa
aacttactaggtaaacgtgtagattactctggccgttctgtaattacagtaggtccaaca
ttacgtttacaccaatgtggtttaccgaaaaaaatggcacttgagttattcaaaccattt
atttacggaaaattagagctacgtggtttagcaacgactattaaagcagctaaaaaatta
gttgaacgtgaagcaccggaagtatgggatgtgttagacgaagttattcgtgaacatccg
gtattattaaaccgtgcgccaacacttcacagattaggtattcaagcatttgaacctgtt
ctaattgaaggtaaagcaatccatttacacccactcgtttgtgcggcttacaacgctgac
ttcgatggtgaccaaatggcggttcacgtaccgttaacgttggaagctcagttagaagct
cgtgcgttaatgatgtcaaccaataacattttatcaccagcaaacggtgagcctattatc
gttccgtctcaagacgttgttttgggtctttattatatgactcgtgacaaagtgaatggt
ttaggtgaaggtgctgtatttaaagatcctaaagaagctgaaaaagcatatcgtaccaac
aatgttgaattgcacagccgagttaaagttagaattacagaaaccctaacaaatgatgca
ggcgaaaaagaaacggcaactcgtattgttgatacaactgctggtcgtgcaatattatcg
ttaattttaccagaaggcatgtcgtttgatttaatcaaccagccaatgggtaaaaagcaa
atttctcgcttgctaaatggctgttatcgtcaacttggtttaaaagatactgttatcttt
gctgaccaaattatgtatacaggtttccattttgcaatgctatcaggtgcctctgttggt
attgatgatatggttattcctgatgccaagaaagatattgttgatgcggctgaagctgaa
gttactgagattcaggagcagttccaatctggtcttgtaacagcgggtgaaaaatacaac
aagattatcgatatttggtcttctgccaatgaacgcgttgctaagtcaatgatggacaac
ttatcaaaagaagttgttaaaaacgcaaaaggcgaagatgaagagcaagacagctttaac
tcaatttatatgatggcggattcaggcgctcgtggtagcccagctcagattcgtcagtta
gcaggtatgcgtggcttgatggcaaaaccggatggttcaatcatagaaacgccaattatc
gctaacttccgtgaaggtttgaacgtacttcagtactttatttctactcacggtgctcgt
aaaggtttggctgatactgcacttaaaaccgcaaactcaggttatttaacacgtcgttta
gttgatgttgctcaagatatggttgtattgagcgaagattgtggtactgaagatggtact
gtaatgcgtccattaatcgaaggcggtgatgttgtagagccacttcgagagcgtgtatta
ggtcgtgttgtagcagaagatgtatatcttccaaatagcaatgaagtacttatcccacgt
aacgtgatgattgacgaagctttatgtgatcaattagaaattaattcaattgatgaagtt
aaagttcgctcagttataacttgtgataatgactttggtgtttgtgctcagtgttatggt
cgtgacttggctcgtggtcatatcattaaccaaggtgaatccgttggtgttattgcggca
caatcgattggtgaaccgggtacacagcttaccatgcgtacattccacattggtggtgca
gcatcaagagcgtcagctgaaaacagcattcaagttaaaacggatggttcaattaaatta
gctcgtgctaaatttgtaacgaactcagatggaaaaattgtcattacttcacgttcaagt
gaattaacggtaattgatgaattaggccgtcaaaaagaacgttataaagtaccttacggt
gccgtaatgagcaaagcagacggtgaagcagtttcggctggcgaagtcattgctaattgg
gatccgcatacgcatccaattattaccgaggttgaaggtaaagttcagtttgctgatatg
gtcgatggtgttactattacccgtcaaaccgatgagttaactggtttatctagcattgtg
gttatcgatccgaaagatcgcacaggctcaggtaaagaaatgcgccctgcgattcgattg
gttgatgaaaaaggtcaagcggttaacatgagcggcacagatatgccagctcagtacttc
ttgcctggtaatgcattagttaaccttgaagatggtgcgcaggtacaaagtggtgatgcg
attgcacgtattccgcaagagagttcgaaaactcgtgacattacgggtggtctacctcga
gtagctgatttatttgaagcgcgtaaaccgaaagatccagctatcttagctgaaatgtct
ggtactgtgagctttggtaaagaaacaaaaggcaaacgccgtttgattattaccgcagag
catggtgctgttcagcacgaagaaatgattcctaaatggcgtcaattaaatgtgtttgaa
ggtgagcaggttgaaaaaggtgaggtaatcgccgatggtcctgaatcacctcatgatatt
ttacgtctacgtggtactttagatgtttgtacctacatcgtaaacgaagtacaagacgta
tatcgtttacaaggtgtaaaaatcaatgacaaacacattgaagtaattgttcgtcaaatg
ctacgtaagtgtgttattaccggtgctggtgattcacaattcttagaaagtgaaacagct
gaagtcgctgcggttaacattggtaatcgtgaactagaagctcaaaataaagagccagct
aaatttgaataccaattattaggtattacaaaagcttcactttcaactgaatcatttatt
tctgccgcctcgttccaggaaacaactcgagtgttaactgaagccgcggtaagtggtaag
acagatgatttacgtggtttgaaagaaaacgttattgtaggtcgtttgattcctgcaggt
acaggctatgcttatcatcaaaaacgggctgcaagccgaatgaaagttgctttacctgaa
gtagaaactcaagtgaccgcagacgaagcagaaaaagccttgactgatgcattaaatgca
gatttcagtggcaatcaggactaa
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