Catenovulum adriaticum: OLW01_13210
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Entry
OLW01_13210 CDS
T08659
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
catt
Catenovulum adriaticum
Pathway
catt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
catt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLW01_13210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
catt03019
]
OLW01_13210
03009 Ribosome biogenesis [BR:
catt03009
]
OLW01_13210
Enzymes [BR:
catt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OLW01_13210
Messenger RNA biogenesis [BR:
catt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OLW01_13210
Ribosome biogenesis [BR:
catt03009
]
Prokaryotic type
rRNA helicases
OLW01_13210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WAJ70085
LinkDB
All DBs
Position
3002851..3004659
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AA seq
602 aa
AA seq
DB search
MQNNESTVLFNELGLPAPILQAIENMGFTQPTPIQAQSIPALLEGNDILGEAQTGTGKTA
AFGLPLLAKLDANVRETQMLVVCPTRELAIQVADALADFAKQIKGMKVATVYGGQSYTPQ
IRDLRAGPQVVVGTPGRLMDHIDKGRLKLSNLKACVLDEADEMLNMGFLEDIEWILKHVP
SETQMAFFSATMPPAIRKVTQQFLKSPVHVKIASVKANNANISQRAWRVNRIGKTTGLER
LAETLDYDAMIVFVRTRNDTLILAEHLLSKGHPAAALNGDMNQGDRERIVDQLKNGKVSI
LIATDVVARGLDVPRISHVINYDLPTDAESYVHRIGRTGRAGRSGEAILFANGREMRSLF
RLERATDGKIETFNMPDAKQLGQVRMERMQAQLKATLDSQELDNYREVVAQFMQGNEWSA
EDLAVALLFQQQLKQPLFPKNDPVDNGRDRNNGRDRQNTRGRRDDRVNDRGGRRGGERAE
RGARGDRAPRRNEGDFDTFRFEVGREHGVGPGDIVGAVANEINIDSSNIGHIKLFDQHAY
VDLPKGMPKPLFQKLQQVAIRGRKTSPSIASSKEVSLAASSDRRTPRGDRGSNARRERRP
FN
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaataatgagtctacagttctttttaatgaactgggtttacctgcaccaatttta
caagccatcgaaaatatgggcttcactcaacctactccaattcaagcccaatctattcct
gcattattggaaggtaatgatattttaggtgaagctcaaacaggtacaggtaaaactgcg
gcttttggtttacctttattagccaagctagacgctaacgtgcgcgaaacacaaatgtta
gtagtttgtcctactcgtgaattagccattcaggttgcagatgctttagctgactttgca
aaacaaattaaaggtatgaaagtagcgactgtttatggtggccaatcttatacacctcaa
atccgcgatttacgcgctggtccacaagttgttgttggtacgccgggtcgtttaatggat
catattgataaaggtcgtttaaagctttctaacttaaaagcttgtgtactagatgaagcc
gatgaaatgttaaacatgggctttttagaagacattgagtggattctaaaacacgtacct
agcgaaacccaaatggcgtttttctctgcgactatgccaccggcaattcgcaaagtaacc
caacaatttttaaaatcgccagtgcatgtaaaaattgcatcggttaaagccaataacgct
aacattagccaaagagcttggcgtgtaaaccgtattggtaaaaccacaggtttagagcgt
ttagctgaaaccttagattacgatgcaatgattgtttttgtgcgtactcgtaacgatacc
ctaattttagctgaacatttattaagtaaaggccatcccgcagctgcgctaaatggtgat
atgaaccaaggcgatcgtgagcgtattgttgaccaacttaaaaatggtaaagtgtctatt
ttaattgcaacagacgttgtagcacgtggtcttgatgttccaagaatcagccatgttata
aactacgatttaccaactgatgctgaatcttatgtgcatagaattggtcgtacaggccgt
gccggtcgtagtggtgaagcgattctttttgctaatggccgtgaaatgcgcagtttgttc
cgtttagaacgtgcaacagatggcaaaattgaaacgttcaacatgccagatgcaaaacaa
ttgggccaagttcgcatggaacgtatgcaagctcaattgaaagcaacattagatagccaa
gaactcgacaactaccgtgaagttgttgctcagtttatgcaaggtaacgaatggtctgct
gaagatttagcagttgctttattgttccaacaacaattaaaacaaccattattccctaaa
aatgaccctgtagataatggtcgcgaccgaaataatggccgagaccgtcaaaatacccgt
ggtcgtcgtgatgacagagtaaacgacagaggcggtcgtcgtggtggtgagcgtgcagaa
cgaggcgctcgaggtgatcgagccccacgcagaaacgaaggtgattttgatactttccgt
tttgaagttggacgtgagcatggtgtaggcccaggtgatatcgttggcgcagttgcaaac
gaaattaacatcgacagcagcaatattggccatattaaattatttgaccaacacgcttac
gttgatttacctaaaggtatgccaaagccgttgttccaaaaacttcaacaagttgcaatc
cgtggtcgtaaaacatcaccatcaattgcgtcttcaaaagaagtatcattggcagctagt
tcagaccgcagaaccccaagaggtgatcgtggttcaaatgcacgtcgcgagcgtcgtcca
tttaactaa
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