Cercocebus atys (sooty mangabey): 105575770
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Entry
105575770 CDS
T07242
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
caty
Cercocebus atys (sooty mangabey)
Brite
KEGG Orthology (KO) [BR:
caty00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caty03016
]
105575770 (RTCB)
Enzymes [BR:
caty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105575770 (RTCB)
Transfer RNA biogenesis [BR:
caty03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105575770 (RTCB)
Prokaryotic type
tRNA splicing ligases
105575770 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
105575770
NCBI-ProteinID:
XP_011893391
Ensembl:
ENSCATG00000033424
UniProt:
A0A2K5M278
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKISKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDSEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggaaaagatcagtaaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgagggcgttttctacgtgaatgat
gctctggagaaactgatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcttgccagccatgaaacagattggcaacgtggcagccctgcctggaattgttcat
cggtctattgggcttcctgatgtccattcaggatatggatttgctattgggaacatggca
gcctttgatatgaatgactctgaagcagtggtatccccaggtggtgtcgggtttgacatc
aactgtggtgtccgcttgctaagaaccaatttagatgaaagtgatgtccagcctgtgaag
gagcaacttgcccaagctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atcccaatgaatgccaaagacttggaggaggccttggagatgggggtggactggtcctta
agagaagggtatgcctgggctgaagacaaggagcactgcgaggagtatggaaggatgctg
caagctgaccccaataaggtttctgcaagggctaagaaaagaggccttcctcagttgggg
accctgggagcaggcaaccattatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaaaaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagtagccacagatgcactggtagctatggagaaggcc
atgaagagagacaagattatagtcaatgatcggcagttggcttgtgctcggatcgcttca
ccagagggtcaggactacctgaagggaatggcagcggctgggaactatgcctgggtcaac
cggtcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacccct
gatgacttggacctgcacgtgatctatgatgtttctcacaacattgccaaagtggagcag
catgtagtggatgggaaggagcggacactgttagtacacaggaagggatccacccgcgct
ttccctcctcaccatcccctcatagctgttgattaccagctcactggacaaccagtgctc
attggtggcaccatgggaacctgtagttatgttcttactggcactgaacagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcattgtcccgagcaaaatctcga
cgtaatttagatttccaggatgttttagacaaattggcagatatgggaattgcaatccgt
gttgcctcacccaaactggttatggaagaggctcctgagtcctataagaatgtgacagat
gtggtgaatacctgccacgatgctggaatcagcaagaaagccattaaactgagaccaatc
gctgtgatcaaagggtag
DBGET
integrated database retrieval system
