KEGG   Cercocebus atys (sooty mangabey): 105594847
Entry
105594847         CDS       T07242                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
caty  Cercocebus atys (sooty mangabey)
Pathway
caty03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:caty00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105594847 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:caty03041]
    105594847 (SNRNP40)
Spliceosome [BR:caty03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    105594847 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    105594847 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 105594847
NCBI-ProteinID: XP_011935149
Ensembl: ENSCATG00000027459
LinkDB
Position
Unknown
AA seq 357 aa
MIEQQKRKGPELPLVPVKRQRHELLLGAGSGPGAGQQQATPGALLQAGPPRCSSLQAPIM
LLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTD
GSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWD
IRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTG
LSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKI
AAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASSDKRLYMGEIQ
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgatagaacaacagaagcgtaagggcccagagttgccgctggttccagtcaagcggcag
cggcatgagttgctgctgggagcggggtcgggcccaggagccgggcagcagcaggcgacg
ccgggagctttgctgcaagcgggacctccaaggtgttcctcccttcaagccccaatcatg
ctgctctctggacatgaaggggaagtatactgctgcaagttccaccccaacggatccacc
ttagcatctgcaggatttgaccgactgatattgttgtggaatgtctatggtgactgtgat
aactatgccacactgaaaggacacagtggagcagtgatggaattgcattacaacacagat
ggcagtatgctcttctcagcatccacagataaaactgtggctgtgtgggatagtgaaaca
ggcgagagggttaaaaggctaaagggacatacctcctttgtgaattcctgttatccagcc
aggagaggccctcagcttgtctgcactggcagtgacgatggcacagttaagctttgggac
atccggaagaaagcagccatccagacatttcagaacacataccaggtgttagctgtgacc
ttcaatgacacaagtgatcagattatttctggtggaatagacaatgatatcaaggtctgg
gacctgcgccagaacaagctaacctacaccatgagaggccatgcagattcagtgactggc
ctgagtttaagttctgaaggctcttatcttttgtccaatgcaatggacaatacagttcgt
gtctgggatgtccggccatttgcccccaaagagaggtgtgtaaagatatttcaaggaaat
gtgcacaactttgaaaagaaccttctgagatgttcttggtcacctgatggaagcaaaata
gcagctggctcagccgacaggtttgtgtatgtgtgggataccacaagcaggagaatatta
tataagctgcccggccatgctggctccatcaatgaagttgctttccaccctgacgagccc
atcattatctcagcatcgagtgacaagagactgtatatgggagagattcagtga

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