Cercocebus atys (sooty mangabey): 105595224
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Entry
105595224 CDS
T07242
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
caty
Cercocebus atys (sooty mangabey)
Pathway
caty03030
DNA replication
caty03410
Base excision repair
caty03420
Nucleotide excision repair
caty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105595224 (LIG1)
03410 Base excision repair
105595224 (LIG1)
03420 Nucleotide excision repair
105595224 (LIG1)
03430 Mismatch repair
105595224 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caty03032
]
105595224 (LIG1)
03400 DNA repair and recombination proteins [BR:
caty03400
]
105595224 (LIG1)
Enzymes [BR:
caty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105595224 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
105595224 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
105595224 (LIG1)
DNA replication proteins [BR:
caty03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
105595224 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
105595224 (LIG1)
DNA repair and recombination proteins [BR:
caty03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
105595224 (LIG1)
NER (nucleotide excision repair)
Other NER factors
105595224 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
105595224 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
DUF1685
Presenilin
Motif
Other DBs
NCBI-GeneID:
105595224
NCBI-ProteinID:
XP_011936100
Ensembl:
ENSCATG00000042574
UniProt:
A0A2K5NRT6
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNGSRETEPPPKAALKEWNGVSESDSPVKRPGRKVA
RVLGSEGEEEDEALSPAKGQKPAPDCSQISPPRSATSPENNASLSDTSPRDSSPSGIPKR
RTARKQLPKRTIQEVLEEQSADEDREAKRKKEEEEVETPEESLTEAEVATEKEGEDRDQP
TTPPKPLKTSEAETPTESVSEPEVATRQELQEEEEQTKPPRSAPKTLSSFFTPRKPAIKK
EVKEEEPGAPGKEGAAEGPLDPSGYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEE
VSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQA
TGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTA
KKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAVV
DAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLK
PMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDI
ISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFD
LIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCEG
LMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA
SYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAATPDHWLDPSAV
WEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQS
QIQNQQGEDSGSDPEDTY
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcattcttccaccccaagaaagagggtaaagcgaagaagcct
gagaaggaggcatccaacggcagcagagagacggagccccctccgaaggcggcactgaaa
gagtggaatggagtgtccgagagtgactctccagtgaaaaggccagggaggaaggtggcc
cgggtcctgggcagcgaaggggaagaggaggatgaagcccttagccctgctaaaggccag
aagcctgccccggactgctcacagatctccccgccccgttccgccacatctcctgaaaac
aacgcttccctctctgacacctctcccagggacagctccccatcagggatcccgaagcgt
cgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcagagt
gcggacgaggacagagaagccaaaaggaagaaggaggaggaagaagtggagaccccagaa
gaaagcctcacagaggctgaagtggcaacagagaaggaaggagaagacagggaccagccc
accacacctcccaagcccctaaagacctccgaagcagagaccccgacggaaagcgtttcg
gagcccgaggtggccacgaggcaggaactgcaggaggaggaagagcagaccaagcctccc
cgcagcgctcccaagacactcagcagcttcttcacaccccggaagccagcaatcaaaaaa
gaagtgaaggaggaggagccaggggctccaggaaaggagggagctgctgagggacccctg
gacccatccggttacaatcctgccaagaacaactaccatcccgtggaagacgcctgctgg
aaaccgggccagaaggtcccttacctggctgtggcccggacgtttgagaagatcgaggag
gtgtctgcccggctccggatggtggagacactgagcaacttgctgcgctccgtggtggcc
ctgtcgcctccagacctcctcccggtcctctacctcagcctcaaccaccttgggccaccg
cagcagggcctggagcttggcgtgggtgatggcgtccttctcaaggcagtggcccaggcc
acaggtcggcagctggagtccgtccgggctgaggcagccgagaagggcgacgtggggctg
gtggccgagaacagccgcagcacccagaggctcatgctgccaccacctccgctcactgct
tccggggtcttcagcaagttccgtgacatcgccaggctcactggcagtgcttccacagcc
aagaagatagacatcatcaaaggcctctttgtggcctgccgccactcagaagcccggttc
atcgccaggtccctgagtggacggctgcgccttgggctggcagagcagtcggtgctggcc
gccctctcccaggctgtgagcctcacgcccccaggccaagaattcccaccagccgtggtg
gatgctgggaagggcaagacagcagaggccagaaagacgtggctggaggagcaaggcatg
atcctgaagcagacattctgcgaggtgcccgacctggaccgaattatccccgtgctgctg
gagcacggcctggaacgtctgccggagcactgcaagctgagcccagggattcccctgaaa
ccaatgttggcccatcccacgcggggcgtcagtgaggtcctgaaacgctttgaggaggca
gctttcacctgcgaatacaaatacgatgggcagagggcacagatccacgccctggaaggc
ggggaggtgaagatcttcagcaggaatcaggaagacaacactggaaagtacccggacatc
atcagccgcatccccaagattaaactcccatcggtcacatccttcatcctggacactgaa
gctgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacccgc
aaacgcaaggaagtggatgcgtccgagatccaggtgcaggtgtgtttgtacgccttcgac
ctcatctacctcaatggagagtccctggtacgtgagcccctttcccggcgccggcagctg
ctccgggagaactttgtggagacggagggcgagtttgtcttcgccacctctctggacacc
aaggacgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgcgagggg
ctgatggtgaagaccctggatgtcgatgccacctatgagatcgccaagagatcgcacaac
tggctcaagctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtggtg
atcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgctggcc
tcctatgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttcagc
gacgaggagctggaggagcatcaccagagcctcaaggccctggtgctgcccagcccccgc
ccttatgtgcggatagatggtgccgcgactcccgaccactggctggaccccagcgccgtg
tgggaggtgaagtgtgccgacctctccctctcccccatctaccctgctgcgcggggcctg
gtggatagtgacaaggggatctcccttcgcttccctcggtttattcgagtccgtgaagac
aagcagccggagcaggccaccaccagtgcacaggtggcctgtttgtaccggaagcaaagt
cagattcagaaccaacaaggcgaggactcaggctctgaccctgaagatacctactaa
DBGET
integrated database retrieval system
