Carassius auratus (goldfish): 113038304
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Entry
113038304 CDS
T07313
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
caua
Carassius auratus (goldfish)
Pathway
caua03440
Homologous recombination
caua03450
Non-homologous end-joining
caua04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
caua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113038304 (rad50)
03450 Non-homologous end-joining
113038304 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
113038304 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caua03032
]
113038304 (rad50)
03400 DNA repair and recombination proteins [BR:
caua03400
]
113038304 (rad50)
DNA replication proteins [BR:
caua03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
113038304 (rad50)
DNA repair and recombination proteins [BR:
caua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
113038304 (rad50)
BRCA1-C complex
113038304 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
113038304 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
AAA_29
zf-met
AAA_13
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
113038304
NCBI-ProteinID:
XP_026051403
Ensembl:
ENSCARG00000022693
UniProt:
A0A6P6IVL5
LinkDB
All DBs
Position
21:complement(6332206..6426804)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVITFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGSTFVHDPKDAHETDVRAQIRLQFRDVNGDPVAVQRSMQSTQKGKKTEFKTLEGVITR
FKHGEKVGLSSKCAEMDREMISALGVSKAVINHVIFCHQEESNWPLSEGKALKQKFDDIF
SATRYIKVLETLRALRLKQSGIVKTCQTELKYLKQNKDKAQEIRELLSTKETQLASSKES
VQRIESQIDPLENRMYDIDSSLSKVMKLDNDIKALDSRKKQMEDDNRELEEKMEQVFQGT
DDQLQDMYQNHQRTVKEKERRLVECQRDLERAGRECQRMNRIKSDMLVEQGRLQLEADRH
TQNIKKRDTQVKSLASFLELEGYDRTPLNERQLQSFHRQVKERLDQDTEALDQTMRDMQE
KETQKQQSIDDLRDKKTGLERTIELKRDIQAKKQQELKNIKSDLQRLEGSSSRLQELETE
LQKAERELDNAVQACTVDSLKAEVVELQKEKTELDQAQRKLDQEMELLNTHTATRTQMDM
LKKTKMEKEEQVRKIKSRHNEELVSLMGHFPSKKELEDWIYSKSKEINFTRDRLNKMNKE
LASGEQKKSHLTAEVKRKEEQLASFEERLFNVCGSQDFESDLNKLEDELEKCSKQRAMLA
GATAVYSQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEHDLK
RKERRRDEMMELKPIRQSIAELQEKELPELRNKLQRVNRDIEKLKGDTEEQETLLCTLMS
EEDTAKACLQDISLMDRYQLDLKDVERKIAQHAARLQGVDLSRTMQQVSQEKQETQHRLD
TTCSKIELKRKLIQDQQEQIQALRSSVNEIRGEKLQISSNMQKRQQLEEQCVEYSTEIQT
LHRDIRDAKEQVSPLAATLEKLQQEKQDLAERKRQKQGEGQEKINGIKEKVKNLTLLERE
ITKYIEEGKDSYKEQKETELQEVDKQLHEAEKQREKINKDIGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVSRKREDLVKEMGNMQVLQLRNERREVERKLEDLKKNRSVALGRQKG
YEDEILRFRKELSEDQYCRADDLYRDQMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENTSAGLKRRTYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSNYVEHFYRIRKNQDQCSEITKCNINTLNSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagatcgaaaagatgagtatcctgggagtaaggagttttggagttgaggataaa
gacaaacaagtgatcaccttcttcagccctctgacggtccttgtgggacctaacggagct
ggaaaaacgaccatcattgaatgcctcaagtacatcacttcaggagactttccaccagga
agtaaaggaagcacatttgtccatgatcccaaagatgcccatgagacggatgtacgggca
cagatcagactccagtttagagatgtgaatggcgatcctgtggctgtccagaggtctatg
caaagcacacagaagggcaagaaaacagagttcaaaacccttgagggagtcatcacaaga
ttcaagcacggagagaaagtgggcctgagctccaagtgtgctgaaatggaccgtgagatg
atctcggcactgggcgtctccaaggctgttatcaaccatgtcatcttctgccaccaagag
gagtccaactggcctctgagtgaaggaaaagccctcaagcagaagtttgatgacattttc
tcagccacaaggtacattaaggtactggagaccctgcgggcactgaggttgaagcagagc
ggcattgtcaaaacctgccagacggagctcaagtacctgaaacagaacaaagataaagcc
caagagatccgagagctgctgtccactaaagagactcagctggcttcctctaaagaaagt
gtccaacgcatcgagagtcagatagacccactggagaaccgaatgtatgacatagacagt
agtctcagcaaagtgatgaaattggataatgacatcaaagctttggacagcaggaagaaa
caaatggaggatgataaccgggaactagaggaaaagatggaacaggtattccagggcaca
gacgatcagctgcaggacatgtatcagaatcaccagaggactgtgaaggagaaggaacgg
agacttgtggagtgccagcgtgatcttgaacgtgcaggcagagagtgccaaaggatgaac
cgcatcaaatctgacatgctagttgagcaaggacgtctgcagttggaggccgatagacac
acacaaaacattaaaaagagggacacccaggtcaagagtttagcatctttcctggagtta
gagggttatgaccggacccctcttaatgagcgacagctccagagcttccacagacaagtc
aaagagagactggaccaggacacagaggcccttgaccaaacgatgcgtgatatgcaagag
aaagagacacagaagcagcaaagcatcgatgatctcagagataaaaagacaggtctagag
agaaccattgagctcaagagagacatacaggccaagaaacaacaggaactgaaaaacatc
aagtctgacctccaaagactggagggctcctcaagcagactacaggagctagaaactgaa
cttcagaaagcggagcgtgagcttgataatgctgtacaggcctgtacggtggacagtcta
aaggcagaggtagttgaactacaaaaggagaaaaccgaactggatcaggcccagcgcaag
ctagaccaggagatggaattactcaacacacacaccgcaacacgcacacaaatggacatg
ctcaagaagaccaagatggaaaaagaagaacaagtgaggaagatcaagtcgagacataat
gaagagctggtgtctctgatgggacacttcccaagcaagaaagagctagaagactggatc
tactccaaatccaaagagatcaacttcaccagagaccggctcaacaaaatgaataaggag
cttgcatctggagaacagaagaagtctcatttgactgctgaagtcaaacgtaaggaagag
cagctggccagctttgaagagagactttttaatgtgtgcggcagtcaggactttgagtcg
gacttgaacaaactggaggatgagttggagaagtgctccaaacagagagctatgctggcg
ggtgctacggccgtgtacagtcagttcatcagtcagctgacagaggagggcgagccctgc
tgtcccgtgtgtcagcgtgtgttcccatcagaagcagagctccaggacgtcattaatgac
atgcagtcaaagctgcgactcgtcccagacaaactaaagaacactgagcatgacctgaag
aggaaggagcgccggcgtgatgaaatgatggaactgaagcccatcaggcagtccatagcg
gagctccaggagaaagagctgccagagctcagaaataaactccagcgtgtcaatcgagac
attgagaagctgaaaggagacactgaggagcaagagacactgctgtgcacactgatgtct
gaggaagacacagccaaggcctgtctgcaggacatatcactcatggatcgctatcagctt
gacctgaaggatgtagaaaggaagatcgctcaacatgcagccaggctgcagggagttgac
ctcagccgcaccatgcagcaggtcagccaggagaagcaagagacccaacaccgcctggac
accacctgcagcaagattgaactgaagaggaaactgatccaggaccagcaggagcagatc
caggccttgaggagcagtgtaaatgagattcgtggagaaaagctccagatctccagcaat
atgcagaaacgtcaacagttggaggagcagtgtgtggagtactccactgagatccagaca
ctccacagagacattcgagatgcgaaggagcaggtgtctcctctagctgccactctggag
aagctccagcaggagaaacaggaccttgctgagcgcaagagacagaaacagggggaagga
caggaaaagataaatggaatcaaagaaaaagttaaaaacctgaccctccttgagagagag
attaccaagtacatagaagaggggaaggacagctacaaagagcaaaaggaaactgagcta
caagaggtggacaaacaactacacgaggctgaaaaacagcgagagaagatcaataaagac
attggcaacatccgacaagatattgacactcagaaggttcaagagcgctggctacaggac
aacttgacattacgaaagcgtgtggaggagctgaaagaagtgtccaggaaacgtgaagac
ttggttaaggagatgggcaacatgcaagttctgcagctgcgcaatgagcggcgagaagtg
gaacgaaagttggaggacctaaaaaagaaccgcagtgtggcactcggtcgacagaaaggc
tatgaagacgagatcctccgtttccgtaaagagctcagtgaggatcagtattgccgggcc
gatgatctctacagagaccaaatgattgtgatgagaacaacagagttggccaataaggac
ctggacatctactacaaagccctagaccaaacaataatgaagtttcacagcatgaagatg
gaggagattaataaaatcatcagagatttatggcggagcacgtacagaggacaagacatt
gagtatgtggagatacgctctgatgtggatgagaacacctccgctggcctgaaaagaagg
acctataactatagagtggtaatggtcaaaggagacactgcgttggacatgcgtggacgt
tgtagtgctggacaaaaggttcttgcctctctcataatacggttggctctggctgagacc
ttttgcctgaactgtgggattctggcactggatgagcccaccaccaacctagacagagag
aatatagagtctttggcacatgcactggtggagataattaagagtcgttctcgccaacgc
aacttccagctccttgttatcacccacgatgaggattttgtggagctcctgggacgatcc
aactatgttgagcatttctacaggatcaggaagaaccaggaccagtgctcagagatcaca
aagtgtaacattaacactcttaactcctacctgcactga
DBGET
integrated database retrieval system
